Gene : Seita.1G328900 S. italica v2.2
Defline:  (1 of 1) PTHR11851:SF68 - PRESEQUENCE PROTEASE 1, CHLOROPLASTIC/MITOCHONDRIAL-RELATED Genomic Order:  3289
Name:  ? Seita.1G328900 Secondary Identifier:  ? PAC:32697362
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G328900 0.5kb upstream 0.5kb upstream 8012 true scaffold_1: 38864442-38872453 Setaria italica
Seita.1G328900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38864442-38864941 Setaria italica
Seita.1G328900 0.5kb downstream 0.5kb downstream 8012 true scaffold_1: 38864942-38872953 Setaria italica
Seita.1G328900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38872454-38872953 Setaria italica
Seita.1G328900 1.0kb upstream 1.0kb upstream 8512 true scaffold_1: 38863942-38872453 Setaria italica
Seita.1G328900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38863942-38864941 Setaria italica
Seita.1G328900 1.0kb downstream 1.0kb downstream 8512 true scaffold_1: 38864942-38873453 Setaria italica
Seita.1G328900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38872454-38873453 Setaria italica
Seita.1G328900 2.0kb upstream 2.0kb upstream 9512 true scaffold_1: 38862942-38872453 Setaria italica
Seita.1G328900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38862942-38864941 Setaria italica
Seita.1G328900 2.0kb downstream 2.0kb downstream 9512 true scaffold_1: 38864942-38874453 Setaria italica
Seita.1G328900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38872454-38874453 Setaria italica
Seita.1G328900 5.0kb upstream 5.0kb upstream 12512 true scaffold_1: 38859942-38872453 Setaria italica
Seita.1G328900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38859942-38864941 Setaria italica
Seita.1G328900 5.0kb downstream 5.0kb downstream 12512 true scaffold_1: 38864942-38877453 Setaria italica
Seita.1G328900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38872454-38877453 Setaria italica
Seita.1G328900 10.0kb upstream 10.0kb upstream 17512 true scaffold_1: 38854942-38872453 Setaria italica
Seita.1G328900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38854942-38864941 Setaria italica
Seita.1G328900 10.0kb downstream 10.0kb downstream 17512 true scaffold_1: 38864942-38882453 Setaria italica
Seita.1G328900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38872454-38882453 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186623 5267 Panicoideae View MSA
124580072 5269 Grass View MSA
122042751 5273 Angiosperm View MSA
121343874 5274 Embryophyte View MSA
123424762 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.234     High  
cufflinks 24.949     High  
cufflinks 69.354     High High
cufflinks 48.817     High  
cufflinks 59.53     High  
cufflinks 22.759     High  
cufflinks 35.343     High  
cufflinks 51.196     High  
cufflinks 88.54     High High
cufflinks 9.771       Low
cufflinks 21.348     High  
cufflinks 13.758     High Low
cufflinks 14.631     High Low
cufflinks 96.187     High High
cufflinks 14.826     High Low
cufflinks 29.788     High  
cufflinks 14.494     High Low
cufflinks 38.675     High  
cufflinks 69.741     High High
cufflinks 14.297       Low

0 Strain