Gene : Seita.1G331800 S. italica v2.2
Defline:  (1 of 21) PF03763 - Remorin, C-terminal region (Remorin_C) Genomic Order:  3318
Name:  ? Seita.1G331800 Secondary Identifier:  ? PAC:32693911
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G331800 0.5kb upstream 0.5kb upstream 5465 true scaffold_1: 39065407-39070871 Setaria italica
Seita.1G331800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39070372-39070871 Setaria italica
Seita.1G331800 0.5kb downstream 0.5kb downstream 5465 true scaffold_1: 39064907-39070371 Setaria italica
Seita.1G331800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39064907-39065406 Setaria italica
Seita.1G331800 1.0kb upstream 1.0kb upstream 5965 true scaffold_1: 39065407-39071371 Setaria italica
Seita.1G331800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39070372-39071371 Setaria italica
Seita.1G331800 1.0kb downstream 1.0kb downstream 5965 true scaffold_1: 39064407-39070371 Setaria italica
Seita.1G331800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39064407-39065406 Setaria italica
Seita.1G331800 2.0kb upstream 2.0kb upstream 6965 true scaffold_1: 39065407-39072371 Setaria italica
Seita.1G331800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39070372-39072371 Setaria italica
Seita.1G331800 2.0kb downstream 2.0kb downstream 6965 true scaffold_1: 39063407-39070371 Setaria italica
Seita.1G331800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39063407-39065406 Setaria italica
Seita.1G331800 5.0kb upstream 5.0kb upstream 9965 true scaffold_1: 39065407-39075371 Setaria italica
Seita.1G331800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39070372-39075371 Setaria italica
Seita.1G331800 5.0kb downstream 5.0kb downstream 9965 true scaffold_1: 39060407-39070371 Setaria italica
Seita.1G331800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39060407-39065406 Setaria italica
Seita.1G331800 10.0kb upstream 10.0kb upstream 14965 true scaffold_1: 39065407-39080371 Setaria italica
Seita.1G331800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39070372-39080371 Setaria italica
Seita.1G331800 10.0kb downstream 10.0kb downstream 14965 true scaffold_1: 39055407-39070371 Setaria italica
Seita.1G331800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39055407-39065406 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190001 5267 Panicoideae View MSA
124572387 5269 Grass View MSA
122043924 5273 Angiosperm View MSA
121348920 5274 Embryophyte View MSA
123381079 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.375        
cufflinks 21.818     High High
cufflinks 0.804       Low
cufflinks 0.764       Low
cufflinks 1.611        
cufflinks 22.8     High High
cufflinks 7.125        
cufflinks 11.01        
cufflinks 5.648        
cufflinks 8.113        
cufflinks 10.26        
cufflinks 5.392        
cufflinks 3.176        
cufflinks 1.394       Low
cufflinks 7.018        
cufflinks 3.319        
cufflinks 7.008        
cufflinks 3.555        
cufflinks 0.427       Low
cufflinks 7.444        

0 Strain