Gene : Seita.1G332200 S. italica v2.2
Defline:  (1 of 18) PF00069//PF01453 - Protein kinase domain (Pkinase) // D-mannose binding lectin (B_lectin) Genomic Order:  3322
Name:  ? Seita.1G332200 Secondary Identifier:  ? PAC:32696933
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G332200 0.5kb upstream 0.5kb upstream 3407 true scaffold_1: 39090583-39093989 Setaria italica
Seita.1G332200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39093490-39093989 Setaria italica
Seita.1G332200 0.5kb downstream 0.5kb downstream 3407 true scaffold_1: 39090083-39093489 Setaria italica
Seita.1G332200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39090083-39090582 Setaria italica
Seita.1G332200 1.0kb upstream 1.0kb upstream 3907 true scaffold_1: 39090583-39094489 Setaria italica
Seita.1G332200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39093490-39094489 Setaria italica
Seita.1G332200 1.0kb downstream 1.0kb downstream 3907 true scaffold_1: 39089583-39093489 Setaria italica
Seita.1G332200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39089583-39090582 Setaria italica
Seita.1G332200 2.0kb upstream 2.0kb upstream 4907 true scaffold_1: 39090583-39095489 Setaria italica
Seita.1G332200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39093490-39095489 Setaria italica
Seita.1G332200 2.0kb downstream 2.0kb downstream 4907 true scaffold_1: 39088583-39093489 Setaria italica
Seita.1G332200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39088583-39090582 Setaria italica
Seita.1G332200 5.0kb upstream 5.0kb upstream 7907 true scaffold_1: 39090583-39098489 Setaria italica
Seita.1G332200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39093490-39098489 Setaria italica
Seita.1G332200 5.0kb downstream 5.0kb downstream 7907 true scaffold_1: 39085583-39093489 Setaria italica
Seita.1G332200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39085583-39090582 Setaria italica
Seita.1G332200 10.0kb upstream 10.0kb upstream 12907 true scaffold_1: 39090583-39103489 Setaria italica
Seita.1G332200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39093490-39103489 Setaria italica
Seita.1G332200 10.0kb downstream 10.0kb downstream 12907 true scaffold_1: 39080583-39093489 Setaria italica
Seita.1G332200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39080583-39090582 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192658 5267 Panicoideae View MSA
124583539 5269 Grass View MSA
122046776 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.28        
cufflinks 0.08     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.068     Low  
cufflinks 0.021     Low  
cufflinks 0.051     Low  
cufflinks 0.014     Low Low
cufflinks 1.671       High
cufflinks 0.631        
cufflinks 1.218        
cufflinks 1.338        
cufflinks 0.021     Low  
cufflinks 3.688       High
cufflinks 0.014     Low Low
cufflinks 3.015       High
cufflinks 0.013     Low Low
cufflinks 0.01     Low Low
cufflinks 3.434       High

0 Strain