Gene : Seita.1G330500 S. italica v2.2
Defline:  (1 of 1) PTHR31889:SF2 - FUCOSYLTRANSFERASE 2-RELATED Genomic Order:  3305
Name:  ? Seita.1G330500 Secondary Identifier:  ? PAC:32696719
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G330500 0.5kb upstream 0.5kb upstream 2998 true scaffold_1: 39002163-39005160 Setaria italica
Seita.1G330500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39002163-39002662 Setaria italica
Seita.1G330500 0.5kb downstream 0.5kb downstream 2998 true scaffold_1: 39002663-39005660 Setaria italica
Seita.1G330500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39005161-39005660 Setaria italica
Seita.1G330500 1.0kb upstream 1.0kb upstream 3498 true scaffold_1: 39001663-39005160 Setaria italica
Seita.1G330500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39001663-39002662 Setaria italica
Seita.1G330500 1.0kb downstream 1.0kb downstream 3498 true scaffold_1: 39002663-39006160 Setaria italica
Seita.1G330500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39005161-39006160 Setaria italica
Seita.1G330500 2.0kb upstream 2.0kb upstream 4498 true scaffold_1: 39000663-39005160 Setaria italica
Seita.1G330500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39000663-39002662 Setaria italica
Seita.1G330500 2.0kb downstream 2.0kb downstream 4498 true scaffold_1: 39002663-39007160 Setaria italica
Seita.1G330500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39005161-39007160 Setaria italica
Seita.1G330500 5.0kb upstream 5.0kb upstream 7498 true scaffold_1: 38997663-39005160 Setaria italica
Seita.1G330500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38997663-39002662 Setaria italica
Seita.1G330500 5.0kb downstream 5.0kb downstream 7498 true scaffold_1: 39002663-39010160 Setaria italica
Seita.1G330500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39005161-39010160 Setaria italica
Seita.1G330500 10.0kb upstream 10.0kb upstream 12498 true scaffold_1: 38992663-39005160 Setaria italica
Seita.1G330500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38992663-39002662 Setaria italica
Seita.1G330500 10.0kb downstream 10.0kb downstream 12498 true scaffold_1: 39002663-39015160 Setaria italica
Seita.1G330500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39005161-39015160 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188088 5267 Panicoideae View MSA
124586288 5269 Grass View MSA
122051157 5273 Angiosperm View MSA
121351526 5274 Embryophyte View MSA
123427849 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.111     Low  
cufflinks 1.21       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low Low
cufflinks 1.121       High
cufflinks 0.07     Low  
cufflinks 0.107     Low  
cufflinks 0.05     Low  
cufflinks 0.439        
cufflinks 0.197        
cufflinks 0.234        
cufflinks 0.134     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.25        
cufflinks 0.039     Low  
cufflinks 0.26        
cufflinks 0.008     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.203        

0 Strain