Gene : Seita.1G335000 S. italica v2.2
Defline:  (1 of 4) PF13350 - Tyrosine phosphatase family (Y_phosphatase3) Genomic Order:  3350
Name:  ? Seita.1G335000 Secondary Identifier:  ? PAC:32693868
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G335000 0.5kb upstream 0.5kb upstream 4463 true scaffold_1: 39281211-39285673 Setaria italica
Seita.1G335000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39285174-39285673 Setaria italica
Seita.1G335000 0.5kb downstream 0.5kb downstream 4463 true scaffold_1: 39280711-39285173 Setaria italica
Seita.1G335000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39280711-39281210 Setaria italica
Seita.1G335000 1.0kb upstream 1.0kb upstream 4963 true scaffold_1: 39281211-39286173 Setaria italica
Seita.1G335000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39285174-39286173 Setaria italica
Seita.1G335000 1.0kb downstream 1.0kb downstream 4963 true scaffold_1: 39280211-39285173 Setaria italica
Seita.1G335000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39280211-39281210 Setaria italica
Seita.1G335000 2.0kb upstream 2.0kb upstream 5963 true scaffold_1: 39281211-39287173 Setaria italica
Seita.1G335000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39285174-39287173 Setaria italica
Seita.1G335000 2.0kb downstream 2.0kb downstream 5963 true scaffold_1: 39279211-39285173 Setaria italica
Seita.1G335000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39279211-39281210 Setaria italica
Seita.1G335000 5.0kb upstream 5.0kb upstream 8963 true scaffold_1: 39281211-39290173 Setaria italica
Seita.1G335000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39285174-39290173 Setaria italica
Seita.1G335000 5.0kb downstream 5.0kb downstream 8963 true scaffold_1: 39276211-39285173 Setaria italica
Seita.1G335000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39276211-39281210 Setaria italica
Seita.1G335000 10.0kb upstream 10.0kb upstream 13963 true scaffold_1: 39281211-39295173 Setaria italica
Seita.1G335000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39285174-39295173 Setaria italica
Seita.1G335000 10.0kb downstream 10.0kb downstream 13963 true scaffold_1: 39271211-39285173 Setaria italica
Seita.1G335000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39271211-39281210 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188459 5267 Panicoideae View MSA
124573463 5269 Grass View MSA
122050938 5273 Angiosperm View MSA
121344841 5274 Embryophyte View MSA
123380112 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.745        
cufflinks 0.382        
cufflinks 0.2        
cufflinks 0.069     Low Low
cufflinks 0.104       Low
cufflinks 0.533        
cufflinks 0.259        
cufflinks 0.907        
cufflinks 0.111       Low
cufflinks 3.284        
cufflinks 2.222        
cufflinks 8.428       High
cufflinks 3.931        
cufflinks 1.133        
cufflinks 8.425       High
cufflinks 0.239        
cufflinks 14.59     High High
cufflinks 0.222        
cufflinks 1.063        
cufflinks 7.421       High

0 Strain