Gene : Seita.1G334800 S. italica v2.2
Defline:  (1 of 1) PTHR22847:SF451 - E3 UBIQUITIN-PROTEIN LIGASE RFWD2 Genomic Order:  3348
Name:  ? Seita.1G334800 Secondary Identifier:  ? PAC:32696861
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G334800 0.5kb upstream 0.5kb upstream 6823 true scaffold_1: 39272127-39278949 Setaria italica
Seita.1G334800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39278450-39278949 Setaria italica
Seita.1G334800 0.5kb downstream 0.5kb downstream 6823 true scaffold_1: 39271627-39278449 Setaria italica
Seita.1G334800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39271627-39272126 Setaria italica
Seita.1G334800 1.0kb upstream 1.0kb upstream 7323 true scaffold_1: 39272127-39279449 Setaria italica
Seita.1G334800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39278450-39279449 Setaria italica
Seita.1G334800 1.0kb downstream 1.0kb downstream 7323 true scaffold_1: 39271127-39278449 Setaria italica
Seita.1G334800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39271127-39272126 Setaria italica
Seita.1G334800 2.0kb upstream 2.0kb upstream 8323 true scaffold_1: 39272127-39280449 Setaria italica
Seita.1G334800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39278450-39280449 Setaria italica
Seita.1G334800 2.0kb downstream 2.0kb downstream 8323 true scaffold_1: 39270127-39278449 Setaria italica
Seita.1G334800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39270127-39272126 Setaria italica
Seita.1G334800 5.0kb upstream 5.0kb upstream 11323 true scaffold_1: 39272127-39283449 Setaria italica
Seita.1G334800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39278450-39283449 Setaria italica
Seita.1G334800 5.0kb downstream 5.0kb downstream 11323 true scaffold_1: 39267127-39278449 Setaria italica
Seita.1G334800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39267127-39272126 Setaria italica
Seita.1G334800 10.0kb upstream 10.0kb upstream 16323 true scaffold_1: 39272127-39288449 Setaria italica
Seita.1G334800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39278450-39288449 Setaria italica
Seita.1G334800 10.0kb downstream 10.0kb downstream 16323 true scaffold_1: 39262127-39278449 Setaria italica
Seita.1G334800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39262127-39272126 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195622 5267 Panicoideae View MSA
124576957 5269 Grass View MSA
122044386 5273 Angiosperm View MSA
121345400 5274 Embryophyte View MSA
123427986 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.86        
cufflinks 10.333        
cufflinks 10.878     High  
cufflinks 10.73        
cufflinks 10.882     High  
cufflinks 10.791        
cufflinks 16.114     High High
cufflinks 7.526        
cufflinks 9.694        
cufflinks 4.038       Low
cufflinks 6.361        
cufflinks 6.188        
cufflinks 7.433        
cufflinks 8.123        
cufflinks 7.758        
cufflinks 23.907     High High
cufflinks 6.416        
cufflinks 9.402        
cufflinks 15.678     High High
cufflinks 6.866        

0 Strain