Gene : Seita.1G337000 S. italica v2.2
Defline:  (1 of 1) PTHR10429 - DNA-3-METHYLADENINE GLYCOSYLASE Genomic Order:  3370
Name:  ? Seita.1G337000 Secondary Identifier:  ? PAC:32695553
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G337000 0.5kb upstream 0.5kb upstream 3122 true scaffold_1: 39451906-39455027 Setaria italica
Seita.1G337000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39454528-39455027 Setaria italica
Seita.1G337000 0.5kb downstream 0.5kb downstream 3122 true scaffold_1: 39451406-39454527 Setaria italica
Seita.1G337000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39451406-39451905 Setaria italica
Seita.1G337000 1.0kb upstream 1.0kb upstream 3622 true scaffold_1: 39451906-39455527 Setaria italica
Seita.1G337000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39454528-39455527 Setaria italica
Seita.1G337000 1.0kb downstream 1.0kb downstream 3622 true scaffold_1: 39450906-39454527 Setaria italica
Seita.1G337000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39450906-39451905 Setaria italica
Seita.1G337000 2.0kb upstream 2.0kb upstream 4622 true scaffold_1: 39451906-39456527 Setaria italica
Seita.1G337000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39454528-39456527 Setaria italica
Seita.1G337000 2.0kb downstream 2.0kb downstream 4622 true scaffold_1: 39449906-39454527 Setaria italica
Seita.1G337000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39449906-39451905 Setaria italica
Seita.1G337000 5.0kb upstream 5.0kb upstream 7622 true scaffold_1: 39451906-39459527 Setaria italica
Seita.1G337000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39454528-39459527 Setaria italica
Seita.1G337000 5.0kb downstream 5.0kb downstream 7622 true scaffold_1: 39446906-39454527 Setaria italica
Seita.1G337000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39446906-39451905 Setaria italica
Seita.1G337000 10.0kb upstream 10.0kb upstream 12622 true scaffold_1: 39451906-39464527 Setaria italica
Seita.1G337000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39454528-39464527 Setaria italica
Seita.1G337000 10.0kb downstream 10.0kb downstream 12622 true scaffold_1: 39441906-39454527 Setaria italica
Seita.1G337000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39441906-39451905 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186306 5267 Panicoideae View MSA
124571805 5269 Grass View MSA
122044995 5273 Angiosperm View MSA
121344812 5274 Embryophyte View MSA
123380104 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.256        
cufflinks 0.647        
cufflinks 0.097       Low
cufflinks 0.184        
cufflinks 0.12       Low
cufflinks 0.672        
cufflinks 0.432        
cufflinks 0.56        
cufflinks 0.426        
cufflinks 0.744        
cufflinks 0.431        
cufflinks 1.575       High
cufflinks 0.346        
cufflinks 0.325        
cufflinks 1.054       High
cufflinks 0.137       Low
cufflinks 1.767       High
cufflinks 0.107       Low
cufflinks 0.127       Low
cufflinks 2.157       High

0 Strain