Gene : Seita.1G337200 S. italica v2.2
Defline:  (1 of 1) PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 Genomic Order:  3372
Name:  ? Seita.1G337200 Secondary Identifier:  ? PAC:32693977
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G337200 0.5kb upstream 0.5kb upstream 4417 true scaffold_1: 39458055-39462471 Setaria italica
Seita.1G337200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39461972-39462471 Setaria italica
Seita.1G337200 0.5kb downstream 0.5kb downstream 4417 true scaffold_1: 39457555-39461971 Setaria italica
Seita.1G337200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39457555-39458054 Setaria italica
Seita.1G337200 1.0kb upstream 1.0kb upstream 4917 true scaffold_1: 39458055-39462971 Setaria italica
Seita.1G337200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39461972-39462971 Setaria italica
Seita.1G337200 1.0kb downstream 1.0kb downstream 4917 true scaffold_1: 39457055-39461971 Setaria italica
Seita.1G337200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39457055-39458054 Setaria italica
Seita.1G337200 2.0kb upstream 2.0kb upstream 5917 true scaffold_1: 39458055-39463971 Setaria italica
Seita.1G337200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39461972-39463971 Setaria italica
Seita.1G337200 2.0kb downstream 2.0kb downstream 5917 true scaffold_1: 39456055-39461971 Setaria italica
Seita.1G337200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39456055-39458054 Setaria italica
Seita.1G337200 5.0kb upstream 5.0kb upstream 8917 true scaffold_1: 39458055-39466971 Setaria italica
Seita.1G337200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39461972-39466971 Setaria italica
Seita.1G337200 5.0kb downstream 5.0kb downstream 8917 true scaffold_1: 39453055-39461971 Setaria italica
Seita.1G337200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39453055-39458054 Setaria italica
Seita.1G337200 10.0kb upstream 10.0kb upstream 13917 true scaffold_1: 39458055-39471971 Setaria italica
Seita.1G337200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39461972-39471971 Setaria italica
Seita.1G337200 10.0kb downstream 10.0kb downstream 13917 true scaffold_1: 39448055-39461971 Setaria italica
Seita.1G337200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39448055-39458054 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186054 5267 Panicoideae View MSA
124573302 5269 Grass View MSA
122045152 5273 Angiosperm View MSA
121344274 5274 Embryophyte View MSA
123424030 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.295        
cufflinks 5.57       High
cufflinks 2.862        
cufflinks 2.443       Low
cufflinks 1.903       Low
cufflinks 5.307       High
cufflinks 2.954        
cufflinks 4.994       High
cufflinks 3.138        
cufflinks 4.695        
cufflinks 3.122        
cufflinks 4.85        
cufflinks 2.676        
cufflinks 3.622        
cufflinks 4.002        
cufflinks 2.419       Low
cufflinks 5.306       High
cufflinks 3.572        
cufflinks 2.095       Low
cufflinks 4.77        

0 Strain