Gene : Seita.1G335900 S. italica v2.2
Defline:  (1 of 1) PTHR13471 - TETRATRICOPEPTIDE-LIKE HELICAL Genomic Order:  3359
Name:  ? Seita.1G335900 Secondary Identifier:  ? PAC:32697835
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G335900 0.5kb upstream 0.5kb upstream 10393 true scaffold_1: 39359526-39369918 Setaria italica
Seita.1G335900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39359526-39360025 Setaria italica
Seita.1G335900 0.5kb downstream 0.5kb downstream 10393 true scaffold_1: 39360026-39370418 Setaria italica
Seita.1G335900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39369919-39370418 Setaria italica
Seita.1G335900 1.0kb upstream 1.0kb upstream 10893 true scaffold_1: 39359026-39369918 Setaria italica
Seita.1G335900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39359026-39360025 Setaria italica
Seita.1G335900 1.0kb downstream 1.0kb downstream 10893 true scaffold_1: 39360026-39370918 Setaria italica
Seita.1G335900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39369919-39370918 Setaria italica
Seita.1G335900 2.0kb upstream 2.0kb upstream 11893 true scaffold_1: 39358026-39369918 Setaria italica
Seita.1G335900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39358026-39360025 Setaria italica
Seita.1G335900 2.0kb downstream 2.0kb downstream 11893 true scaffold_1: 39360026-39371918 Setaria italica
Seita.1G335900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39369919-39371918 Setaria italica
Seita.1G335900 5.0kb upstream 5.0kb upstream 14893 true scaffold_1: 39355026-39369918 Setaria italica
Seita.1G335900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39355026-39360025 Setaria italica
Seita.1G335900 5.0kb downstream 5.0kb downstream 14893 true scaffold_1: 39360026-39374918 Setaria italica
Seita.1G335900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39369919-39374918 Setaria italica
Seita.1G335900 10.0kb upstream 10.0kb upstream 19893 true scaffold_1: 39350026-39369918 Setaria italica
Seita.1G335900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39350026-39360025 Setaria italica
Seita.1G335900 10.0kb downstream 10.0kb downstream 19893 true scaffold_1: 39360026-39379918 Setaria italica
Seita.1G335900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39369919-39379918 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026294 5273 Angiosperm View MSA
122182077 5267 Panicoideae View MSA
124568438 5269 Grass View MSA
121345312 5274 Embryophyte View MSA
123423930 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.384       High
cufflinks 5.016        
cufflinks 3.989        
cufflinks 3.381        
cufflinks 2.955        
cufflinks 3.754        
cufflinks 4.343        
cufflinks 2.599       Low
cufflinks 2.69       Low
cufflinks 2.633       Low
cufflinks 4.19        
cufflinks 4.088        
cufflinks 3.406        
cufflinks 3.41        
cufflinks 4.8        
cufflinks 5.767       High
cufflinks 3.045        
cufflinks 7.955       High
cufflinks 3.005        
cufflinks 3.629        

0 Strain