Gene : Seita.1G339300 S. italica v2.2
Defline:  (1 of 2) 6.1.1.5 - Isoleucine--tRNA ligase / Isoleucyl-tRNA synthetase Genomic Order:  3393
Name:  ? Seita.1G339300 Secondary Identifier:  ? PAC:32698089
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G339300 0.5kb upstream 0.5kb upstream 10008 true scaffold_1: 39639814-39649821 Setaria italica
Seita.1G339300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39639814-39640313 Setaria italica
Seita.1G339300 0.5kb downstream 0.5kb downstream 10008 true scaffold_1: 39640314-39650321 Setaria italica
Seita.1G339300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39649822-39650321 Setaria italica
Seita.1G339300 1.0kb upstream 1.0kb upstream 10508 true scaffold_1: 39639314-39649821 Setaria italica
Seita.1G339300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39639314-39640313 Setaria italica
Seita.1G339300 1.0kb downstream 1.0kb downstream 10508 true scaffold_1: 39640314-39650821 Setaria italica
Seita.1G339300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39649822-39650821 Setaria italica
Seita.1G339300 2.0kb upstream 2.0kb upstream 11508 true scaffold_1: 39638314-39649821 Setaria italica
Seita.1G339300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39638314-39640313 Setaria italica
Seita.1G339300 2.0kb downstream 2.0kb downstream 11508 true scaffold_1: 39640314-39651821 Setaria italica
Seita.1G339300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39649822-39651821 Setaria italica
Seita.1G339300 5.0kb upstream 5.0kb upstream 14508 true scaffold_1: 39635314-39649821 Setaria italica
Seita.1G339300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39635314-39640313 Setaria italica
Seita.1G339300 5.0kb downstream 5.0kb downstream 14508 true scaffold_1: 39640314-39654821 Setaria italica
Seita.1G339300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39649822-39654821 Setaria italica
Seita.1G339300 10.0kb upstream 10.0kb upstream 19508 true scaffold_1: 39630314-39649821 Setaria italica
Seita.1G339300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39630314-39640313 Setaria italica
Seita.1G339300 10.0kb downstream 10.0kb downstream 19508 true scaffold_1: 39640314-39659821 Setaria italica
Seita.1G339300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39649822-39659821 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185947 5267 Panicoideae View MSA
124573656 5269 Grass View MSA
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.425        
cufflinks 7.168        
cufflinks 9.915        
cufflinks 7.072        
cufflinks 12.523     High  
cufflinks 6.559        
cufflinks 17.294     High High
cufflinks 14.152     High  
cufflinks 30.118     High High
cufflinks 3.521       Low
cufflinks 7.166        
cufflinks 3.19       Low
cufflinks 3.001       Low
cufflinks 11.387        
cufflinks 4.882        
cufflinks 20.762     High High
cufflinks 3.277       Low
cufflinks 6.57        
cufflinks 8.263        
cufflinks 3.468       Low

0 Strain