Gene : Seita.1G338400 S. italica v2.2
Defline:  (1 of 1) PTHR21717:SF25 - MYB FAMILY TRANSCRIPTION FACTOR TRFL6-RELATED Genomic Order:  3384
Name:  ? Seita.1G338400 Secondary Identifier:  ? PAC:32696756
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G338400 0.5kb upstream 0.5kb upstream 5338 true scaffold_1: 39539708-39545045 Setaria italica
Seita.1G338400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39539708-39540207 Setaria italica
Seita.1G338400 0.5kb downstream 0.5kb downstream 5338 true scaffold_1: 39540208-39545545 Setaria italica
Seita.1G338400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39545046-39545545 Setaria italica
Seita.1G338400 1.0kb upstream 1.0kb upstream 5838 true scaffold_1: 39539208-39545045 Setaria italica
Seita.1G338400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39539208-39540207 Setaria italica
Seita.1G338400 1.0kb downstream 1.0kb downstream 5838 true scaffold_1: 39540208-39546045 Setaria italica
Seita.1G338400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39545046-39546045 Setaria italica
Seita.1G338400 2.0kb upstream 2.0kb upstream 6838 true scaffold_1: 39538208-39545045 Setaria italica
Seita.1G338400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39538208-39540207 Setaria italica
Seita.1G338400 2.0kb downstream 2.0kb downstream 6838 true scaffold_1: 39540208-39547045 Setaria italica
Seita.1G338400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39545046-39547045 Setaria italica
Seita.1G338400 5.0kb upstream 5.0kb upstream 9838 true scaffold_1: 39535208-39545045 Setaria italica
Seita.1G338400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39535208-39540207 Setaria italica
Seita.1G338400 5.0kb downstream 5.0kb downstream 9838 true scaffold_1: 39540208-39550045 Setaria italica
Seita.1G338400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39545046-39550045 Setaria italica
Seita.1G338400 10.0kb upstream 10.0kb upstream 14838 true scaffold_1: 39530208-39545045 Setaria italica
Seita.1G338400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39530208-39540207 Setaria italica
Seita.1G338400 10.0kb downstream 10.0kb downstream 14838 true scaffold_1: 39540208-39555045 Setaria italica
Seita.1G338400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39545046-39555045 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180914 5267 Panicoideae View MSA
124589901 5269 Grass View MSA
122046145 5273 Angiosperm View MSA
123429070 5275 Viridiplantae View MSA
121348022 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.774       High
cufflinks 6.351       High
cufflinks 3.093        
cufflinks 2.863       Low
cufflinks 2.662       Low
cufflinks 6.04        
cufflinks 4.785        
cufflinks 4.158        
cufflinks 2.932       Low
cufflinks 2.99       Low
cufflinks 4.731        
cufflinks 5.733        
cufflinks 4.458        
cufflinks 3.114        
cufflinks 5.791        
cufflinks 5.401        
cufflinks 4.734        
cufflinks 7.808       High
cufflinks 2.58       Low
cufflinks 4.747        

0 Strain