Gene : Seita.1G341200 S. italica v2.2
Defline:  (1 of 1) PTHR10772:SF0 - 20 KDA CHAPERONIN, CHLOROPLASTIC Genomic Order:  3412
Name:  ? Seita.1G341200 Secondary Identifier:  ? PAC:32695136
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G341200 0.5kb upstream 0.5kb upstream 3127 true scaffold_1: 39754473-39757599 Setaria italica
Seita.1G341200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39757100-39757599 Setaria italica
Seita.1G341200 0.5kb downstream 0.5kb downstream 3127 true scaffold_1: 39753973-39757099 Setaria italica
Seita.1G341200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39753973-39754472 Setaria italica
Seita.1G341200 1.0kb upstream 1.0kb upstream 3627 true scaffold_1: 39754473-39758099 Setaria italica
Seita.1G341200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39757100-39758099 Setaria italica
Seita.1G341200 1.0kb downstream 1.0kb downstream 3627 true scaffold_1: 39753473-39757099 Setaria italica
Seita.1G341200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39753473-39754472 Setaria italica
Seita.1G341200 2.0kb upstream 2.0kb upstream 4627 true scaffold_1: 39754473-39759099 Setaria italica
Seita.1G341200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39757100-39759099 Setaria italica
Seita.1G341200 2.0kb downstream 2.0kb downstream 4627 true scaffold_1: 39752473-39757099 Setaria italica
Seita.1G341200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39752473-39754472 Setaria italica
Seita.1G341200 5.0kb upstream 5.0kb upstream 7627 true scaffold_1: 39754473-39762099 Setaria italica
Seita.1G341200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39757100-39762099 Setaria italica
Seita.1G341200 5.0kb downstream 5.0kb downstream 7627 true scaffold_1: 39749473-39757099 Setaria italica
Seita.1G341200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39749473-39754472 Setaria italica
Seita.1G341200 10.0kb upstream 10.0kb upstream 12627 true scaffold_1: 39754473-39767099 Setaria italica
Seita.1G341200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39757100-39767099 Setaria italica
Seita.1G341200 10.0kb downstream 10.0kb downstream 12627 true scaffold_1: 39744473-39757099 Setaria italica
Seita.1G341200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39744473-39754472 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179962 5267 Panicoideae View MSA
124568437 5269 Grass View MSA
122045141 5273 Angiosperm View MSA
121344791 5274 Embryophyte View MSA
123424643 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.408        
cufflinks 14.095     High  
cufflinks 0.485       Low
cufflinks 0.29       Low
cufflinks 7.193        
cufflinks 14.278     High  
cufflinks 24.495     High  
cufflinks 59.86     High High
cufflinks 80.357     High High
cufflinks 16.728     High  
cufflinks 12.043        
cufflinks 4.04        
cufflinks 3.275        
cufflinks 0.83       Low
cufflinks 4.119        
cufflinks 4.477        
cufflinks 5.618        
cufflinks 1.426        
cufflinks 1.015       Low
cufflinks 6.684        

0 Strain