Gene : Seita.1G340900 S. italica v2.2
Defline:  (1 of 1) KOG0352 - ATP-dependent DNA helicase Genomic Order:  3409
Name:  ? Seita.1G340900 Secondary Identifier:  ? PAC:32697062
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G340900 0.5kb upstream 0.5kb upstream 5106 true scaffold_1: 39737388-39742493 Setaria italica
Seita.1G340900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 39741994-39742493 Setaria italica
Seita.1G340900 0.5kb downstream 0.5kb downstream 5106 true scaffold_1: 39736888-39741993 Setaria italica
Seita.1G340900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 39736888-39737387 Setaria italica
Seita.1G340900 1.0kb upstream 1.0kb upstream 5606 true scaffold_1: 39737388-39742993 Setaria italica
Seita.1G340900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 39741994-39742993 Setaria italica
Seita.1G340900 1.0kb downstream 1.0kb downstream 5606 true scaffold_1: 39736388-39741993 Setaria italica
Seita.1G340900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 39736388-39737387 Setaria italica
Seita.1G340900 2.0kb upstream 2.0kb upstream 6606 true scaffold_1: 39737388-39743993 Setaria italica
Seita.1G340900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 39741994-39743993 Setaria italica
Seita.1G340900 2.0kb downstream 2.0kb downstream 6606 true scaffold_1: 39735388-39741993 Setaria italica
Seita.1G340900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 39735388-39737387 Setaria italica
Seita.1G340900 5.0kb upstream 5.0kb upstream 9606 true scaffold_1: 39737388-39746993 Setaria italica
Seita.1G340900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 39741994-39746993 Setaria italica
Seita.1G340900 5.0kb downstream 5.0kb downstream 9606 true scaffold_1: 39732388-39741993 Setaria italica
Seita.1G340900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 39732388-39737387 Setaria italica
Seita.1G340900 10.0kb upstream 10.0kb upstream 14606 true scaffold_1: 39737388-39751993 Setaria italica
Seita.1G340900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 39741994-39751993 Setaria italica
Seita.1G340900 10.0kb downstream 10.0kb downstream 14606 true scaffold_1: 39727388-39741993 Setaria italica
Seita.1G340900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 39727388-39737387 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026250 5273 Angiosperm View MSA
122182523 5267 Panicoideae View MSA
124580881 5269 Grass View MSA
121296244 5274 Embryophyte View MSA
123427743 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.645        
cufflinks 8.276       High
cufflinks 5.379        
cufflinks 4.263        
cufflinks 3.633       Low
cufflinks 7.686       High
cufflinks 5.511        
cufflinks 4.951        
cufflinks 3.7       Low
cufflinks 3.952       Low
cufflinks 5.356        
cufflinks 6.004        
cufflinks 6.42        
cufflinks 4.511        
cufflinks 6.753       High
cufflinks 5.902        
cufflinks 5.25        
cufflinks 3.676       Low
cufflinks 3.907       Low
cufflinks 5.566        

0 Strain