Gene : Seita.1G346700 S. italica v2.2
Defline:  (1 of 2) PTHR22950:SF269 - EXPRESSED PROTEIN Genomic Order:  3467
Name:  ? Seita.1G346700 Secondary Identifier:  ? PAC:32696765
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G346700 0.5kb upstream 0.5kb upstream 5287 true scaffold_1: 40126223-40131509 Setaria italica
Seita.1G346700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40131010-40131509 Setaria italica
Seita.1G346700 0.5kb downstream 0.5kb downstream 5287 true scaffold_1: 40125723-40131009 Setaria italica
Seita.1G346700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40125723-40126222 Setaria italica
Seita.1G346700 1.0kb upstream 1.0kb upstream 5787 true scaffold_1: 40126223-40132009 Setaria italica
Seita.1G346700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40131010-40132009 Setaria italica
Seita.1G346700 1.0kb downstream 1.0kb downstream 5787 true scaffold_1: 40125223-40131009 Setaria italica
Seita.1G346700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40125223-40126222 Setaria italica
Seita.1G346700 2.0kb upstream 2.0kb upstream 6787 true scaffold_1: 40126223-40133009 Setaria italica
Seita.1G346700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40131010-40133009 Setaria italica
Seita.1G346700 2.0kb downstream 2.0kb downstream 6787 true scaffold_1: 40124223-40131009 Setaria italica
Seita.1G346700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40124223-40126222 Setaria italica
Seita.1G346700 5.0kb upstream 5.0kb upstream 9787 true scaffold_1: 40126223-40136009 Setaria italica
Seita.1G346700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40131010-40136009 Setaria italica
Seita.1G346700 5.0kb downstream 5.0kb downstream 9787 true scaffold_1: 40121223-40131009 Setaria italica
Seita.1G346700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40121223-40126222 Setaria italica
Seita.1G346700 10.0kb upstream 10.0kb upstream 14787 true scaffold_1: 40126223-40141009 Setaria italica
Seita.1G346700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40131010-40141009 Setaria italica
Seita.1G346700 10.0kb downstream 10.0kb downstream 14787 true scaffold_1: 40116223-40131009 Setaria italica
Seita.1G346700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40116223-40126222 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186449 5267 Panicoideae View MSA
124578652 5269 Grass View MSA
122047534 5273 Angiosperm View MSA
123429000 5275 Viridiplantae View MSA
121351519 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.718     High  
cufflinks 5.072        
cufflinks 8.004        
cufflinks 10.13        
cufflinks 7.52        
cufflinks 5.279        
cufflinks 4.498        
cufflinks 4.507        
cufflinks 6.924        
cufflinks 13.277        
cufflinks 18.246     High High
cufflinks 7.75        
cufflinks 5.949        
cufflinks 8.152        
cufflinks 3.568       Low
cufflinks 12.936     High  
cufflinks 2.913       Low
cufflinks 63.498     High High
cufflinks 10.144        
cufflinks 3.473       Low

0 Strain