Gene : Seita.1G348200 S. italica v2.2
Defline:  (1 of 1) PTHR10383:SF25 - SERINC-DOMAIN CONTAINING SERINE AND SPHINGOLIPID BIOSYNTHESIS PROTEIN Genomic Order:  3482
Name:  ? Seita.1G348200 Secondary Identifier:  ? PAC:32697028
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G348200 0.5kb upstream 0.5kb upstream 3337 true scaffold_1: 40244840-40248176 Setaria italica
Seita.1G348200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40247677-40248176 Setaria italica
Seita.1G348200 0.5kb downstream 0.5kb downstream 3337 true scaffold_1: 40244340-40247676 Setaria italica
Seita.1G348200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40244340-40244839 Setaria italica
Seita.1G348200 1.0kb upstream 1.0kb upstream 3837 true scaffold_1: 40244840-40248676 Setaria italica
Seita.1G348200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40247677-40248676 Setaria italica
Seita.1G348200 1.0kb downstream 1.0kb downstream 3837 true scaffold_1: 40243840-40247676 Setaria italica
Seita.1G348200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40243840-40244839 Setaria italica
Seita.1G348200 2.0kb upstream 2.0kb upstream 4837 true scaffold_1: 40244840-40249676 Setaria italica
Seita.1G348200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40247677-40249676 Setaria italica
Seita.1G348200 2.0kb downstream 2.0kb downstream 4837 true scaffold_1: 40242840-40247676 Setaria italica
Seita.1G348200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40242840-40244839 Setaria italica
Seita.1G348200 5.0kb upstream 5.0kb upstream 7837 true scaffold_1: 40244840-40252676 Setaria italica
Seita.1G348200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40247677-40252676 Setaria italica
Seita.1G348200 5.0kb downstream 5.0kb downstream 7837 true scaffold_1: 40239840-40247676 Setaria italica
Seita.1G348200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40239840-40244839 Setaria italica
Seita.1G348200 10.0kb upstream 10.0kb upstream 12837 true scaffold_1: 40244840-40257676 Setaria italica
Seita.1G348200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40247677-40257676 Setaria italica
Seita.1G348200 10.0kb downstream 10.0kb downstream 12837 true scaffold_1: 40234840-40247676 Setaria italica
Seita.1G348200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40234840-40244839 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189743 5267 Panicoideae View MSA
124582860 5269 Grass View MSA
122047921 5273 Angiosperm View MSA
121351702 5274 Embryophyte View MSA
123428628 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 119.761     High  
cufflinks 92.932     High  
cufflinks 93.416     High  
cufflinks 88.774     High  
cufflinks 86.253     High  
cufflinks 94.323     High  
cufflinks 106.585     High  
cufflinks 76.524     High Low
cufflinks 70.814     High Low
cufflinks 129.819     High  
cufflinks 139.132     High High
cufflinks 123.411     High  
cufflinks 149.58     High High
cufflinks 94.774     High  
cufflinks 148.445     High High
cufflinks 77.954     High Low
cufflinks 139.772     High High
cufflinks 87.919     High  
cufflinks 102.596     High  
cufflinks 125.726     High  

0 Strain