Gene : Seita.1G351000 S. italica v2.2
Defline:  (1 of 2) 4.1.1.33 - Diphosphomevalonate decarboxylase / Mevalonate pyrophosphate decarboxylase Genomic Order:  3510
Name:  ? Seita.1G351000 Secondary Identifier:  ? PAC:32696239
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5910 Setaria italica pathologic  
Sitalica PWY-922 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G351000 0.5kb upstream 0.5kb upstream 4182 true scaffold_1: 40427626-40431807 Setaria italica
Seita.1G351000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40427626-40428125 Setaria italica
Seita.1G351000 0.5kb downstream 0.5kb downstream 4182 true scaffold_1: 40428126-40432307 Setaria italica
Seita.1G351000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40431808-40432307 Setaria italica
Seita.1G351000 1.0kb upstream 1.0kb upstream 4682 true scaffold_1: 40427126-40431807 Setaria italica
Seita.1G351000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40427126-40428125 Setaria italica
Seita.1G351000 1.0kb downstream 1.0kb downstream 4682 true scaffold_1: 40428126-40432807 Setaria italica
Seita.1G351000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40431808-40432807 Setaria italica
Seita.1G351000 2.0kb upstream 2.0kb upstream 5682 true scaffold_1: 40426126-40431807 Setaria italica
Seita.1G351000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40426126-40428125 Setaria italica
Seita.1G351000 2.0kb downstream 2.0kb downstream 5682 true scaffold_1: 40428126-40433807 Setaria italica
Seita.1G351000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40431808-40433807 Setaria italica
Seita.1G351000 5.0kb upstream 5.0kb upstream 8682 true scaffold_1: 40423126-40431807 Setaria italica
Seita.1G351000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40423126-40428125 Setaria italica
Seita.1G351000 5.0kb downstream 5.0kb downstream 8682 true scaffold_1: 40428126-40436807 Setaria italica
Seita.1G351000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40431808-40436807 Setaria italica
Seita.1G351000 10.0kb upstream 10.0kb upstream 13682 true scaffold_1: 40418126-40431807 Setaria italica
Seita.1G351000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40418126-40428125 Setaria italica
Seita.1G351000 10.0kb downstream 10.0kb downstream 13682 true scaffold_1: 40428126-40441807 Setaria italica
Seita.1G351000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40431808-40441807 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040965 5273 Angiosperm View MSA
122177408 5267 Panicoideae View MSA
124575988 5269 Grass View MSA
121347307 5274 Embryophyte View MSA
123380524 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.961        
cufflinks 16.484     High  
cufflinks 1.037       Low
cufflinks 0.805       Low
cufflinks 0.888       Low
cufflinks 12.894        
cufflinks 6.633        
cufflinks 8.601        
cufflinks 4.949        
cufflinks 17.268     High  
cufflinks 14.569     High  
cufflinks 13.186        
cufflinks 10.091        
cufflinks 1.331       Low
cufflinks 19.771     High High
cufflinks 2.31        
cufflinks 20.435     High High
cufflinks 0.964       Low
cufflinks 1.052       Low
cufflinks 23.784     High High

0 Strain