Gene : Seita.1G352100 S. italica v2.2
Defline:  (1 of 1) PTHR11630:SF42 - DNA REPLICATION LICENSING FACTOR MCM5 Genomic Order:  3521
Name:  ? Seita.1G352100 Secondary Identifier:  ? PAC:32697696
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G352100 0.5kb upstream 0.5kb upstream 5301 true scaffold_1: 40504728-40510028 Setaria italica
Seita.1G352100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40509529-40510028 Setaria italica
Seita.1G352100 0.5kb downstream 0.5kb downstream 5301 true scaffold_1: 40504228-40509528 Setaria italica
Seita.1G352100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40504228-40504727 Setaria italica
Seita.1G352100 1.0kb upstream 1.0kb upstream 5801 true scaffold_1: 40504728-40510528 Setaria italica
Seita.1G352100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40509529-40510528 Setaria italica
Seita.1G352100 1.0kb downstream 1.0kb downstream 5801 true scaffold_1: 40503728-40509528 Setaria italica
Seita.1G352100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40503728-40504727 Setaria italica
Seita.1G352100 2.0kb upstream 2.0kb upstream 6801 true scaffold_1: 40504728-40511528 Setaria italica
Seita.1G352100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40509529-40511528 Setaria italica
Seita.1G352100 2.0kb downstream 2.0kb downstream 6801 true scaffold_1: 40502728-40509528 Setaria italica
Seita.1G352100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40502728-40504727 Setaria italica
Seita.1G352100 5.0kb upstream 5.0kb upstream 9801 true scaffold_1: 40504728-40514528 Setaria italica
Seita.1G352100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40509529-40514528 Setaria italica
Seita.1G352100 5.0kb downstream 5.0kb downstream 9801 true scaffold_1: 40499728-40509528 Setaria italica
Seita.1G352100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40499728-40504727 Setaria italica
Seita.1G352100 10.0kb upstream 10.0kb upstream 14801 true scaffold_1: 40504728-40519528 Setaria italica
Seita.1G352100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40509529-40519528 Setaria italica
Seita.1G352100 10.0kb downstream 10.0kb downstream 14801 true scaffold_1: 40494728-40509528 Setaria italica
Seita.1G352100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40494728-40504727 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190534 5267 Panicoideae View MSA
124572568 5269 Grass View MSA
122046085 5273 Angiosperm View MSA
123428876 5275 Viridiplantae View MSA
121346646 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.791        
cufflinks 12.319        
cufflinks 0.05     Low Low
cufflinks 0.011     Low Low
cufflinks 0.062     Low Low
cufflinks 12.449        
cufflinks 7.118        
cufflinks 7.772        
cufflinks 5.395        
cufflinks 7.73        
cufflinks 10.639        
cufflinks 6.269        
cufflinks 5.144        
cufflinks 0.17       Low
cufflinks 11.404        
cufflinks 0.644        
cufflinks 9.802        
cufflinks 0.16       Low
cufflinks 0.232        
cufflinks 11.482        

0 Strain