Gene : Seita.1G352200 S. italica v2.2
Defline:  (1 of 1) PTHR11879:SF1 - ASPARTATE AMINOTRANSFERASE, CHLOROPLASTIC Genomic Order:  3522
Name:  ? Seita.1G352200 Secondary Identifier:  ? PAC:32693814
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ASPARTATE-DEG1-PWY Setaria italica pathologic  
Sitalica ASPARTATESYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica PWY-7115 Setaria italica pathologic  
Sitalica PWY-7117 Setaria italica pathologic  
Sitalica THRESYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G352200 0.5kb upstream 0.5kb upstream 6513 true scaffold_1: 40513498-40520010 Setaria italica
Seita.1G352200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40513498-40513997 Setaria italica
Seita.1G352200 0.5kb downstream 0.5kb downstream 6513 true scaffold_1: 40513998-40520510 Setaria italica
Seita.1G352200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40520011-40520510 Setaria italica
Seita.1G352200 1.0kb upstream 1.0kb upstream 7013 true scaffold_1: 40512998-40520010 Setaria italica
Seita.1G352200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40512998-40513997 Setaria italica
Seita.1G352200 1.0kb downstream 1.0kb downstream 7013 true scaffold_1: 40513998-40521010 Setaria italica
Seita.1G352200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40520011-40521010 Setaria italica
Seita.1G352200 2.0kb upstream 2.0kb upstream 8013 true scaffold_1: 40511998-40520010 Setaria italica
Seita.1G352200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40511998-40513997 Setaria italica
Seita.1G352200 2.0kb downstream 2.0kb downstream 8013 true scaffold_1: 40513998-40522010 Setaria italica
Seita.1G352200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40520011-40522010 Setaria italica
Seita.1G352200 5.0kb upstream 5.0kb upstream 11013 true scaffold_1: 40508998-40520010 Setaria italica
Seita.1G352200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40508998-40513997 Setaria italica
Seita.1G352200 5.0kb downstream 5.0kb downstream 11013 true scaffold_1: 40513998-40525010 Setaria italica
Seita.1G352200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40520011-40525010 Setaria italica
Seita.1G352200 10.0kb upstream 10.0kb upstream 16013 true scaffold_1: 40503998-40520010 Setaria italica
Seita.1G352200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40503998-40513997 Setaria italica
Seita.1G352200 10.0kb downstream 10.0kb downstream 16013 true scaffold_1: 40513998-40530010 Setaria italica
Seita.1G352200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40520011-40530010 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175651 5267 Panicoideae View MSA
124572981 5269 Grass View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.758        
cufflinks 19.666     High  
cufflinks 103.515     High High
cufflinks 117.551     High High
cufflinks 140.002     High High
cufflinks 13.802     High  
cufflinks 38.734     High  
cufflinks 71.829     High  
cufflinks 65.702     High  
cufflinks 7.338        
cufflinks 7.203        
cufflinks 7.673        
cufflinks 5.277       Low
cufflinks 65.095     High  
cufflinks 6.627       Low
cufflinks 80.574     High  
cufflinks 9.049        
cufflinks 6.297       Low
cufflinks 138.929     High High
cufflinks 10.67        

0 Strain