Gene : Seita.1G354100 S. italica v2.2
Defline:  (1 of 1) PTHR14363:SF16 - HEPARANASE-LIKE PROTEIN 3 Genomic Order:  3541
Name:  ? Seita.1G354100 Secondary Identifier:  ? PAC:32697082
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7213 Setaria italica pathologic  
Sitalica PWY-7214 Setaria italica pathologic  
Sitalica PWY-7445 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G354100 0.5kb upstream 0.5kb upstream 4424 true scaffold_1: 40621150-40625573 Setaria italica
Seita.1G354100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40621150-40621649 Setaria italica
Seita.1G354100 0.5kb downstream 0.5kb downstream 4424 true scaffold_1: 40621650-40626073 Setaria italica
Seita.1G354100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40625574-40626073 Setaria italica
Seita.1G354100 1.0kb upstream 1.0kb upstream 4924 true scaffold_1: 40620650-40625573 Setaria italica
Seita.1G354100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40620650-40621649 Setaria italica
Seita.1G354100 1.0kb downstream 1.0kb downstream 4924 true scaffold_1: 40621650-40626573 Setaria italica
Seita.1G354100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40625574-40626573 Setaria italica
Seita.1G354100 2.0kb upstream 2.0kb upstream 5924 true scaffold_1: 40619650-40625573 Setaria italica
Seita.1G354100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40619650-40621649 Setaria italica
Seita.1G354100 2.0kb downstream 2.0kb downstream 5924 true scaffold_1: 40621650-40627573 Setaria italica
Seita.1G354100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40625574-40627573 Setaria italica
Seita.1G354100 5.0kb upstream 5.0kb upstream 8924 true scaffold_1: 40616650-40625573 Setaria italica
Seita.1G354100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40616650-40621649 Setaria italica
Seita.1G354100 5.0kb downstream 5.0kb downstream 8924 true scaffold_1: 40621650-40630573 Setaria italica
Seita.1G354100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40625574-40630573 Setaria italica
Seita.1G354100 10.0kb upstream 10.0kb upstream 13924 true scaffold_1: 40611650-40625573 Setaria italica
Seita.1G354100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40611650-40621649 Setaria italica
Seita.1G354100 10.0kb downstream 10.0kb downstream 13924 true scaffold_1: 40621650-40635573 Setaria italica
Seita.1G354100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40625574-40635573 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178103 5267 Panicoideae View MSA
124579874 5269 Grass View MSA
122042729 5273 Angiosperm View MSA
121348264 5274 Embryophyte View MSA
123380798 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.244        
cufflinks 23.318     High  
cufflinks 0.331       Low
cufflinks 0.18       Low
cufflinks 0.896       Low
cufflinks 24.953     High  
cufflinks 9.605        
cufflinks 8.13        
cufflinks 10.599        
cufflinks 11.106        
cufflinks 18.78     High  
cufflinks 11.062        
cufflinks 20.2     High  
cufflinks 0.418       Low
cufflinks 19.198     High  
cufflinks 4.339        
cufflinks 10.888        
cufflinks 1.27        
cufflinks 0.321       Low
cufflinks 19.795     High  

0 Strain