Gene : Seita.1G353000 S. italica v2.2
Defline:  (1 of 1) PTHR13109 - NEUROCHONDRIN Genomic Order:  3530
Name:  ? Seita.1G353000 Secondary Identifier:  ? PAC:32697934
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G353000 0.5kb upstream 0.5kb upstream 7545 true scaffold_1: 40558122-40565666 Setaria italica
Seita.1G353000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40558122-40558621 Setaria italica
Seita.1G353000 0.5kb downstream 0.5kb downstream 7545 true scaffold_1: 40558622-40566166 Setaria italica
Seita.1G353000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40565667-40566166 Setaria italica
Seita.1G353000 1.0kb upstream 1.0kb upstream 8045 true scaffold_1: 40557622-40565666 Setaria italica
Seita.1G353000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40557622-40558621 Setaria italica
Seita.1G353000 1.0kb downstream 1.0kb downstream 8045 true scaffold_1: 40558622-40566666 Setaria italica
Seita.1G353000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40565667-40566666 Setaria italica
Seita.1G353000 2.0kb upstream 2.0kb upstream 9045 true scaffold_1: 40556622-40565666 Setaria italica
Seita.1G353000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40556622-40558621 Setaria italica
Seita.1G353000 2.0kb downstream 2.0kb downstream 9045 true scaffold_1: 40558622-40567666 Setaria italica
Seita.1G353000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40565667-40567666 Setaria italica
Seita.1G353000 5.0kb upstream 5.0kb upstream 12045 true scaffold_1: 40553622-40565666 Setaria italica
Seita.1G353000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40553622-40558621 Setaria italica
Seita.1G353000 5.0kb downstream 5.0kb downstream 12045 true scaffold_1: 40558622-40570666 Setaria italica
Seita.1G353000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40565667-40570666 Setaria italica
Seita.1G353000 10.0kb upstream 10.0kb upstream 17045 true scaffold_1: 40548622-40565666 Setaria italica
Seita.1G353000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40548622-40558621 Setaria italica
Seita.1G353000 10.0kb downstream 10.0kb downstream 17045 true scaffold_1: 40558622-40575666 Setaria italica
Seita.1G353000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40565667-40575666 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189030 5267 Panicoideae View MSA
124584444 5269 Grass View MSA
122047027 5273 Angiosperm View MSA
121345052 5274 Embryophyte View MSA
123426950 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.816       High
cufflinks 1.157        
cufflinks 1.164        
cufflinks 1.191        
cufflinks 1.144        
cufflinks 1.39        
cufflinks 0.982        
cufflinks 1.139        
cufflinks 0.905        
cufflinks 1.54        
cufflinks 1.769        
cufflinks 0.742       Low
cufflinks 1.141        
cufflinks 1.13        
cufflinks 1.28        
cufflinks 1.437        
cufflinks 1.065        
cufflinks 4.202       High
cufflinks 0.923        
cufflinks 1.013        

0 Strain