Gene : Seita.1G356300 S. italica v2.2
Defline:  (1 of 1) PTHR24078:SF307 - MOLECULAR CHAPERONE HSP40/DNAJ-LIKE PROTEIN Genomic Order:  3563
Name:  ? Seita.1G356300 Secondary Identifier:  ? PAC:32697190
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G356300 0.5kb upstream 0.5kb upstream 7428 true scaffold_1: 40765762-40773189 Setaria italica
Seita.1G356300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 40772690-40773189 Setaria italica
Seita.1G356300 0.5kb downstream 0.5kb downstream 7428 true scaffold_1: 40765262-40772689 Setaria italica
Seita.1G356300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 40765262-40765761 Setaria italica
Seita.1G356300 1.0kb upstream 1.0kb upstream 7928 true scaffold_1: 40765762-40773689 Setaria italica
Seita.1G356300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 40772690-40773689 Setaria italica
Seita.1G356300 1.0kb downstream 1.0kb downstream 7928 true scaffold_1: 40764762-40772689 Setaria italica
Seita.1G356300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 40764762-40765761 Setaria italica
Seita.1G356300 2.0kb upstream 2.0kb upstream 8928 true scaffold_1: 40765762-40774689 Setaria italica
Seita.1G356300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 40772690-40774689 Setaria italica
Seita.1G356300 2.0kb downstream 2.0kb downstream 8928 true scaffold_1: 40763762-40772689 Setaria italica
Seita.1G356300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 40763762-40765761 Setaria italica
Seita.1G356300 5.0kb upstream 5.0kb upstream 11928 true scaffold_1: 40765762-40777689 Setaria italica
Seita.1G356300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 40772690-40777689 Setaria italica
Seita.1G356300 5.0kb downstream 5.0kb downstream 11928 true scaffold_1: 40760762-40772689 Setaria italica
Seita.1G356300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 40760762-40765761 Setaria italica
Seita.1G356300 10.0kb upstream 10.0kb upstream 16928 true scaffold_1: 40765762-40782689 Setaria italica
Seita.1G356300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 40772690-40782689 Setaria italica
Seita.1G356300 10.0kb downstream 10.0kb downstream 16928 true scaffold_1: 40755762-40772689 Setaria italica
Seita.1G356300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 40755762-40765761 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041212 5273 Angiosperm View MSA
122182955 5267 Panicoideae View MSA
124576482 5269 Grass View MSA
121344164 5274 Embryophyte View MSA
123379988 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.323        
cufflinks 5.806        
cufflinks 4.986        
cufflinks 5.182        
cufflinks 8.313       High
cufflinks 6.498        
cufflinks 8.899       High
cufflinks 8.964       High
cufflinks 16.983     High High
cufflinks 2.303       Low
cufflinks 2.954        
cufflinks 2.85        
cufflinks 2.366       Low
cufflinks 5.845        
cufflinks 1.847       Low
cufflinks 7.624        
cufflinks 2.869        
cufflinks 3.127        
cufflinks 4.959        
cufflinks 3.037        

0 Strain