Gene : Seita.2G051900 S. italica v2.2
Defline:  (1 of 2) PTHR23083//PTHR23083:SF430 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  519
Name:  ? Seita.2G051900 Secondary Identifier:  ? PAC:32721237
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G051900 0.5kb upstream 0.5kb upstream 5574 true scaffold_2: 4159488-4165061 Setaria italica
Seita.2G051900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 4159488-4159987 Setaria italica
Seita.2G051900 0.5kb downstream 0.5kb downstream 5574 true scaffold_2: 4159988-4165561 Setaria italica
Seita.2G051900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 4165062-4165561 Setaria italica
Seita.2G051900 1.0kb upstream 1.0kb upstream 6074 true scaffold_2: 4158988-4165061 Setaria italica
Seita.2G051900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 4158988-4159987 Setaria italica
Seita.2G051900 1.0kb downstream 1.0kb downstream 6074 true scaffold_2: 4159988-4166061 Setaria italica
Seita.2G051900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 4165062-4166061 Setaria italica
Seita.2G051900 2.0kb upstream 2.0kb upstream 7074 true scaffold_2: 4157988-4165061 Setaria italica
Seita.2G051900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 4157988-4159987 Setaria italica
Seita.2G051900 2.0kb downstream 2.0kb downstream 7074 true scaffold_2: 4159988-4167061 Setaria italica
Seita.2G051900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 4165062-4167061 Setaria italica
Seita.2G051900 5.0kb upstream 5.0kb upstream 10074 true scaffold_2: 4154988-4165061 Setaria italica
Seita.2G051900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 4154988-4159987 Setaria italica
Seita.2G051900 5.0kb downstream 5.0kb downstream 10074 true scaffold_2: 4159988-4170061 Setaria italica
Seita.2G051900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 4165062-4170061 Setaria italica
Seita.2G051900 10.0kb upstream 10.0kb upstream 15074 true scaffold_2: 4149988-4165061 Setaria italica
Seita.2G051900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 4149988-4159987 Setaria italica
Seita.2G051900 10.0kb downstream 10.0kb downstream 15074 true scaffold_2: 4159988-4175061 Setaria italica
Seita.2G051900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 4165062-4175061 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188837 5267 Panicoideae View MSA
124571408 5269 Grass View MSA
122042735 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.643     High  
cufflinks 27.613     High High
cufflinks 22.686     High  
cufflinks 19.481     High  
cufflinks 24.295     High  
cufflinks 31.094     High High
cufflinks 19.009     High  
cufflinks 18.626     High  
cufflinks 16.814     High  
cufflinks 12.083       Low
cufflinks 24.322     High  
cufflinks 13.62     High  
cufflinks 19.824     High  
cufflinks 15.352     High  
cufflinks 28.965     High High
cufflinks 13.081     High  
cufflinks 18.79     High  
cufflinks 7.15       Low
cufflinks 12.331     High Low
cufflinks 22.126     High  

0 Strain