Gene : Seita.2G054800 S. italica v2.2
Defline:  (1 of 3) PTHR24012:SF362 - RNA RECOGNITION MOTIF-CONTAINING PROTEIN Genomic Order:  548
Name:  ? Seita.2G054800 Secondary Identifier:  ? PAC:32723016
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G054800 0.5kb upstream 0.5kb upstream 4114 true scaffold_2: 4396261-4400374 Setaria italica
Seita.2G054800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 4399875-4400374 Setaria italica
Seita.2G054800 0.5kb downstream 0.5kb downstream 4114 true scaffold_2: 4395761-4399874 Setaria italica
Seita.2G054800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 4395761-4396260 Setaria italica
Seita.2G054800 1.0kb upstream 1.0kb upstream 4614 true scaffold_2: 4396261-4400874 Setaria italica
Seita.2G054800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 4399875-4400874 Setaria italica
Seita.2G054800 1.0kb downstream 1.0kb downstream 4614 true scaffold_2: 4395261-4399874 Setaria italica
Seita.2G054800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 4395261-4396260 Setaria italica
Seita.2G054800 2.0kb upstream 2.0kb upstream 5614 true scaffold_2: 4396261-4401874 Setaria italica
Seita.2G054800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 4399875-4401874 Setaria italica
Seita.2G054800 2.0kb downstream 2.0kb downstream 5614 true scaffold_2: 4394261-4399874 Setaria italica
Seita.2G054800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 4394261-4396260 Setaria italica
Seita.2G054800 5.0kb upstream 5.0kb upstream 8614 true scaffold_2: 4396261-4404874 Setaria italica
Seita.2G054800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 4399875-4404874 Setaria italica
Seita.2G054800 5.0kb downstream 5.0kb downstream 8614 true scaffold_2: 4391261-4399874 Setaria italica
Seita.2G054800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 4391261-4396260 Setaria italica
Seita.2G054800 10.0kb upstream 10.0kb upstream 13614 true scaffold_2: 4396261-4409874 Setaria italica
Seita.2G054800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 4399875-4409874 Setaria italica
Seita.2G054800 10.0kb downstream 10.0kb downstream 13614 true scaffold_2: 4386261-4399874 Setaria italica
Seita.2G054800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 4386261-4396260 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198046 5267 Panicoideae View MSA
124584920 5269 Grass View MSA
122051526 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121312537 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.06     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain