Gene : Seita.2G055300 S. italica v2.2
Defline:  (1 of 2) KOG1475 - Ribosomal protein RPL1/RPL2/RL4L4 Genomic Order:  553
Name:  ? Seita.2G055300 Secondary Identifier:  ? PAC:32718293
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G055300 0.5kb upstream 0.5kb upstream 3031 true scaffold_2: 4561055-4564085 Setaria italica
Seita.2G055300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 4561055-4561554 Setaria italica
Seita.2G055300 0.5kb downstream 0.5kb downstream 3031 true scaffold_2: 4561555-4564585 Setaria italica
Seita.2G055300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 4564086-4564585 Setaria italica
Seita.2G055300 1.0kb upstream 1.0kb upstream 3531 true scaffold_2: 4560555-4564085 Setaria italica
Seita.2G055300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 4560555-4561554 Setaria italica
Seita.2G055300 1.0kb downstream 1.0kb downstream 3531 true scaffold_2: 4561555-4565085 Setaria italica
Seita.2G055300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 4564086-4565085 Setaria italica
Seita.2G055300 2.0kb upstream 2.0kb upstream 4531 true scaffold_2: 4559555-4564085 Setaria italica
Seita.2G055300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 4559555-4561554 Setaria italica
Seita.2G055300 2.0kb downstream 2.0kb downstream 4531 true scaffold_2: 4561555-4566085 Setaria italica
Seita.2G055300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 4564086-4566085 Setaria italica
Seita.2G055300 5.0kb upstream 5.0kb upstream 7531 true scaffold_2: 4556555-4564085 Setaria italica
Seita.2G055300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 4556555-4561554 Setaria italica
Seita.2G055300 5.0kb downstream 5.0kb downstream 7531 true scaffold_2: 4561555-4569085 Setaria italica
Seita.2G055300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 4564086-4569085 Setaria italica
Seita.2G055300 10.0kb upstream 10.0kb upstream 12531 true scaffold_2: 4551555-4564085 Setaria italica
Seita.2G055300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 4551555-4561554 Setaria italica
Seita.2G055300 10.0kb downstream 10.0kb downstream 12531 true scaffold_2: 4561555-4574085 Setaria italica
Seita.2G055300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 4564086-4574085 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178436 5267 Panicoideae View MSA
124574059 5269 Grass View MSA
122046079 5273 Angiosperm View MSA
121350172 5274 Embryophyte View MSA
123424794 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 92.273     High  
cufflinks 97.862     High  
cufflinks 32.388     High Low
cufflinks 20.15     High Low
cufflinks 29.351     High Low
cufflinks 108.43     High  
cufflinks 72.496     High  
cufflinks 102.806     High  
cufflinks 109.405     High  
cufflinks 148.643     High High
cufflinks 100.512     High  
cufflinks 61.648     High  
cufflinks 38.407     High Low
cufflinks 49.357     High  
cufflinks 70.517     High  
cufflinks 61.708     High  
cufflinks 93.06     High  
cufflinks 67.125     High  
cufflinks 35.877     High Low
cufflinks 85.946     High  

0 Strain