Gene : Seita.2G068200 S. italica v2.2
Defline:  (1 of 3) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  682
Name:  ? Seita.2G068200 Secondary Identifier:  ? PAC:32721082
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7560 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G068200 0.5kb upstream 0.5kb upstream 3973 true scaffold_2: 5682982-5686954 Setaria italica
Seita.2G068200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 5682982-5683481 Setaria italica
Seita.2G068200 0.5kb downstream 0.5kb downstream 3973 true scaffold_2: 5683482-5687454 Setaria italica
Seita.2G068200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 5686955-5687454 Setaria italica
Seita.2G068200 1.0kb upstream 1.0kb upstream 4473 true scaffold_2: 5682482-5686954 Setaria italica
Seita.2G068200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 5682482-5683481 Setaria italica
Seita.2G068200 1.0kb downstream 1.0kb downstream 4473 true scaffold_2: 5683482-5687954 Setaria italica
Seita.2G068200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 5686955-5687954 Setaria italica
Seita.2G068200 2.0kb upstream 2.0kb upstream 5473 true scaffold_2: 5681482-5686954 Setaria italica
Seita.2G068200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 5681482-5683481 Setaria italica
Seita.2G068200 2.0kb downstream 2.0kb downstream 5473 true scaffold_2: 5683482-5688954 Setaria italica
Seita.2G068200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 5686955-5688954 Setaria italica
Seita.2G068200 5.0kb upstream 5.0kb upstream 8473 true scaffold_2: 5678482-5686954 Setaria italica
Seita.2G068200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 5678482-5683481 Setaria italica
Seita.2G068200 5.0kb downstream 5.0kb downstream 8473 true scaffold_2: 5683482-5691954 Setaria italica
Seita.2G068200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 5686955-5691954 Setaria italica
Seita.2G068200 10.0kb upstream 10.0kb upstream 13473 true scaffold_2: 5673482-5686954 Setaria italica
Seita.2G068200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 5673482-5683481 Setaria italica
Seita.2G068200 10.0kb downstream 10.0kb downstream 13473 true scaffold_2: 5683482-5696954 Setaria italica
Seita.2G068200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 5686955-5696954 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180882 5267 Panicoideae View MSA
124583726 5269 Grass View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.105        
cufflinks 0.263        
cufflinks 0.094       Low
cufflinks 0.029     Low Low
cufflinks 0.325        
cufflinks 0.222        
cufflinks 0.819        
cufflinks 0.884        
cufflinks 3.719        
cufflinks 3.899        
cufflinks 2.686        
cufflinks 1.389        
cufflinks 2.338        
cufflinks 4.662       High
cufflinks 3.699        
cufflinks 0.114       Low
cufflinks 1.642        
cufflinks 0.086     Low Low
cufflinks 2.245        
cufflinks 4.148       High

0 Strain