Gene : Seita.2G079200 S. italica v2.2
Defline:  (1 of 3) PTHR10108//PTHR10108:SF908 - METHYLTRANSFERASE Genomic Order:  792
Name:  ? Seita.2G079200 Secondary Identifier:  ? PAC:32723221
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2541 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G079200 0.5kb upstream 0.5kb upstream 6357 true scaffold_2: 6872431-6878787 Setaria italica
Seita.2G079200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 6878288-6878787 Setaria italica
Seita.2G079200 0.5kb downstream 0.5kb downstream 6357 true scaffold_2: 6871931-6878287 Setaria italica
Seita.2G079200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 6871931-6872430 Setaria italica
Seita.2G079200 1.0kb upstream 1.0kb upstream 6857 true scaffold_2: 6872431-6879287 Setaria italica
Seita.2G079200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 6878288-6879287 Setaria italica
Seita.2G079200 1.0kb downstream 1.0kb downstream 6857 true scaffold_2: 6871431-6878287 Setaria italica
Seita.2G079200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 6871431-6872430 Setaria italica
Seita.2G079200 2.0kb upstream 2.0kb upstream 7857 true scaffold_2: 6872431-6880287 Setaria italica
Seita.2G079200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 6878288-6880287 Setaria italica
Seita.2G079200 2.0kb downstream 2.0kb downstream 7857 true scaffold_2: 6870431-6878287 Setaria italica
Seita.2G079200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 6870431-6872430 Setaria italica
Seita.2G079200 5.0kb upstream 5.0kb upstream 10857 true scaffold_2: 6872431-6883287 Setaria italica
Seita.2G079200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 6878288-6883287 Setaria italica
Seita.2G079200 5.0kb downstream 5.0kb downstream 10857 true scaffold_2: 6867431-6878287 Setaria italica
Seita.2G079200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 6867431-6872430 Setaria italica
Seita.2G079200 10.0kb upstream 10.0kb upstream 15857 true scaffold_2: 6872431-6888287 Setaria italica
Seita.2G079200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 6878288-6888287 Setaria italica
Seita.2G079200 10.0kb downstream 10.0kb downstream 15857 true scaffold_2: 6862431-6878287 Setaria italica
Seita.2G079200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 6862431-6872430 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041479 5273 Angiosperm View MSA
122194524 5267 Panicoideae View MSA
124575415 5269 Grass View MSA
121345470 5274 Embryophyte View MSA
123426805 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.413        
cufflinks 7.887       High
cufflinks 0.498       Low
cufflinks 0.329       Low
cufflinks 1.002        
cufflinks 7.469       High
cufflinks 3.282        
cufflinks 3.243        
cufflinks 3.196        
cufflinks 4.461        
cufflinks 4.473        
cufflinks 3.389        
cufflinks 2.115        
cufflinks 0.877        
cufflinks 5.457        
cufflinks 1.446        
cufflinks 4.925        
cufflinks 0.269       Low
cufflinks 1.965        
cufflinks 6.624       High

0 Strain