Gene : Seita.2G081000 S. italica v2.2
Defline:  (1 of 10) 2.4.1.82 - Galactinol--sucrose galactosyltransferase / Raffinose synthase Genomic Order:  810
Name:  ? Seita.2G081000 Secondary Identifier:  ? PAC:32722053
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5337 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G081000 0.5kb upstream 0.5kb upstream 3544 true scaffold_2: 7016221-7019764 Setaria italica
Seita.2G081000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 7016221-7016720 Setaria italica
Seita.2G081000 0.5kb downstream 0.5kb downstream 3544 true scaffold_2: 7016721-7020264 Setaria italica
Seita.2G081000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 7019765-7020264 Setaria italica
Seita.2G081000 1.0kb upstream 1.0kb upstream 4044 true scaffold_2: 7015721-7019764 Setaria italica
Seita.2G081000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 7015721-7016720 Setaria italica
Seita.2G081000 1.0kb downstream 1.0kb downstream 4044 true scaffold_2: 7016721-7020764 Setaria italica
Seita.2G081000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 7019765-7020764 Setaria italica
Seita.2G081000 2.0kb upstream 2.0kb upstream 5044 true scaffold_2: 7014721-7019764 Setaria italica
Seita.2G081000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 7014721-7016720 Setaria italica
Seita.2G081000 2.0kb downstream 2.0kb downstream 5044 true scaffold_2: 7016721-7021764 Setaria italica
Seita.2G081000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 7019765-7021764 Setaria italica
Seita.2G081000 5.0kb upstream 5.0kb upstream 8044 true scaffold_2: 7011721-7019764 Setaria italica
Seita.2G081000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 7011721-7016720 Setaria italica
Seita.2G081000 5.0kb downstream 5.0kb downstream 8044 true scaffold_2: 7016721-7024764 Setaria italica
Seita.2G081000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 7019765-7024764 Setaria italica
Seita.2G081000 10.0kb upstream 10.0kb upstream 13044 true scaffold_2: 7006721-7019764 Setaria italica
Seita.2G081000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 7006721-7016720 Setaria italica
Seita.2G081000 10.0kb downstream 10.0kb downstream 13044 true scaffold_2: 7016721-7029764 Setaria italica
Seita.2G081000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 7019765-7029764 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178143 5267 Panicoideae View MSA
124578254 5269 Grass View MSA
122044208 5273 Angiosperm View MSA
123429020 5275 Viridiplantae View MSA
121345613 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.55     High High
cufflinks 13.108        
cufflinks 0.197       Low
cufflinks 0.322       Low
cufflinks 0.394       Low
cufflinks 8.679        
cufflinks 0.878        
cufflinks 2.004        
cufflinks 0.431       Low
cufflinks 63.888     High High
cufflinks 25.891     High High
cufflinks 19.445     High High
cufflinks 20.777     High High
cufflinks 2.178        
cufflinks 6.869        
cufflinks 3.723        
cufflinks 2.408        
cufflinks 3.356        
cufflinks 2.069        
cufflinks 4.378        

0 Strain