Gene : Seita.2G088100 S. italica v2.2
Defline:  (1 of 1) PTHR10566//PTHR10566:SF41 - CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED Genomic Order:  881
Name:  ? Seita.2G088100 Secondary Identifier:  ? PAC:32718723
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G088100 0.5kb upstream 0.5kb upstream 7317 true scaffold_2: 8038950-8046266 Setaria italica
Seita.2G088100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 8045767-8046266 Setaria italica
Seita.2G088100 0.5kb downstream 0.5kb downstream 7317 true scaffold_2: 8038450-8045766 Setaria italica
Seita.2G088100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8038450-8038949 Setaria italica
Seita.2G088100 1.0kb upstream 1.0kb upstream 7817 true scaffold_2: 8038950-8046766 Setaria italica
Seita.2G088100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 8045767-8046766 Setaria italica
Seita.2G088100 1.0kb downstream 1.0kb downstream 7817 true scaffold_2: 8037950-8045766 Setaria italica
Seita.2G088100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 8037950-8038949 Setaria italica
Seita.2G088100 2.0kb upstream 2.0kb upstream 8817 true scaffold_2: 8038950-8047766 Setaria italica
Seita.2G088100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 8045767-8047766 Setaria italica
Seita.2G088100 2.0kb downstream 2.0kb downstream 8817 true scaffold_2: 8036950-8045766 Setaria italica
Seita.2G088100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 8036950-8038949 Setaria italica
Seita.2G088100 5.0kb upstream 5.0kb upstream 11817 true scaffold_2: 8038950-8050766 Setaria italica
Seita.2G088100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 8045767-8050766 Setaria italica
Seita.2G088100 5.0kb downstream 5.0kb downstream 11817 true scaffold_2: 8033950-8045766 Setaria italica
Seita.2G088100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 8033950-8038949 Setaria italica
Seita.2G088100 10.0kb upstream 10.0kb upstream 16817 true scaffold_2: 8038950-8055766 Setaria italica
Seita.2G088100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 8045767-8055766 Setaria italica
Seita.2G088100 10.0kb downstream 10.0kb downstream 16817 true scaffold_2: 8028950-8045766 Setaria italica
Seita.2G088100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 8028950-8038949 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190050 5267 Panicoideae View MSA
124571886 5269 Grass View MSA
122043555 5273 Angiosperm View MSA
121347120 5274 Embryophyte View MSA
123426388 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.488        
cufflinks 2.552        
cufflinks 6.82       High
cufflinks 4.936        
cufflinks 4.568        
cufflinks 2.437        
cufflinks 3.484        
cufflinks 3.011        
cufflinks 3.284        
cufflinks 1.155       Low
cufflinks 1.398       Low
cufflinks 1.525        
cufflinks 1.771        
cufflinks 8.64       High
cufflinks 1.215       Low
cufflinks 5.281        
cufflinks 1.468       Low
cufflinks 5.675       High
cufflinks 7.093       High
cufflinks 1.308       Low

0 Strain