Gene : Seita.2G001200 S. italica v2.2
Genomic Order:  12 Name:  ? Seita.2G001200
Secondary Identifier:  ? PAC:32720327
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G001200 0.5kb upstream 0.5kb upstream 3580 true scaffold_2: 69770-73349 Setaria italica
Seita.2G001200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 69770-70269 Setaria italica
Seita.2G001200 0.5kb downstream 0.5kb downstream 3580 true scaffold_2: 70270-73849 Setaria italica
Seita.2G001200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 73350-73849 Setaria italica
Seita.2G001200 1.0kb upstream 1.0kb upstream 4080 true scaffold_2: 69270-73349 Setaria italica
Seita.2G001200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 69270-70269 Setaria italica
Seita.2G001200 1.0kb downstream 1.0kb downstream 4080 true scaffold_2: 70270-74349 Setaria italica
Seita.2G001200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 73350-74349 Setaria italica
Seita.2G001200 2.0kb upstream 2.0kb upstream 5080 true scaffold_2: 68270-73349 Setaria italica
Seita.2G001200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 68270-70269 Setaria italica
Seita.2G001200 2.0kb downstream 2.0kb downstream 5080 true scaffold_2: 70270-75349 Setaria italica
Seita.2G001200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 73350-75349 Setaria italica
Seita.2G001200 5.0kb upstream 5.0kb upstream 8080 true scaffold_2: 65270-73349 Setaria italica
Seita.2G001200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 65270-70269 Setaria italica
Seita.2G001200 5.0kb downstream 5.0kb downstream 8080 true scaffold_2: 70270-78349 Setaria italica
Seita.2G001200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 73350-78349 Setaria italica
Seita.2G001200 10.0kb upstream 10.0kb upstream 13080 true scaffold_2: 60270-73349 Setaria italica
Seita.2G001200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 60270-70269 Setaria italica
Seita.2G001200 10.0kb downstream 10.0kb downstream 13080 true scaffold_2: 70270-83349 Setaria italica
Seita.2G001200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 73350-83349 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187503 5267 Panicoideae View MSA
124584607 5269 Grass View MSA
122046117 5273 Angiosperm View MSA
121310558 5274 Embryophyte View MSA
123348011 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.243     High High
cufflinks 15.929     High  
cufflinks 15.024     High  
cufflinks 11.374     High  
cufflinks 11.502     High  
cufflinks 18.91     High High
cufflinks 15.06     High  
cufflinks 14.557     High  
cufflinks 12.984     High  
cufflinks 6.389       Low
cufflinks 12.104        
cufflinks 13.697     High  
cufflinks 11.835        
cufflinks 11.99        
cufflinks 16.044     High  
cufflinks 16.477     High  
cufflinks 15.274     High  
cufflinks 20.385     High High
cufflinks 11.168        
cufflinks 13.304        

0 Strain