Gene : Seita.J021700 S. italica v2.2
Defline:  (1 of 2) PTHR35516:SF1 - CYTOCHROME B6-F COMPLEX SUBUNIT 5 Genomic Order:  91
Name:  ? Seita.J021700 Secondary Identifier:  ? PAC:32706068
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J021700 0.5kb upstream 0.5kb upstream 815 true scaffold_14: 146324-147138 Setaria italica
Seita.J021700 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 146324-146823 Setaria italica
Seita.J021700 0.5kb downstream 0.5kb downstream 317 true scaffold_14: 146824-147140 Setaria italica
Seita.J021700 0.5kb downstream 0.5kb downstream 2 false scaffold_14: 147139-147140 Setaria italica
Seita.J021700 1.0kb upstream 1.0kb upstream 1315 true scaffold_14: 145824-147138 Setaria italica
Seita.J021700 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 145824-146823 Setaria italica
Seita.J021700 1.0kb downstream 1.0kb downstream 317 true scaffold_14: 146824-147140 Setaria italica
Seita.J021700 1.0kb downstream 1.0kb downstream 2 false scaffold_14: 147139-147140 Setaria italica
Seita.J021700 2.0kb upstream 2.0kb upstream 2315 true scaffold_14: 144824-147138 Setaria italica
Seita.J021700 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 144824-146823 Setaria italica
Seita.J021700 2.0kb downstream 2.0kb downstream 317 true scaffold_14: 146824-147140 Setaria italica
Seita.J021700 2.0kb downstream 2.0kb downstream 2 false scaffold_14: 147139-147140 Setaria italica
Seita.J021700 5.0kb upstream 5.0kb upstream 5315 true scaffold_14: 141824-147138 Setaria italica
Seita.J021700 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 141824-146823 Setaria italica
Seita.J021700 5.0kb downstream 5.0kb downstream 317 true scaffold_14: 146824-147140 Setaria italica
Seita.J021700 5.0kb downstream 5.0kb downstream 2 false scaffold_14: 147139-147140 Setaria italica
Seita.J021700 10.0kb upstream 10.0kb upstream 10315 true scaffold_14: 136824-147138 Setaria italica
Seita.J021700 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 136824-146823 Setaria italica
Seita.J021700 10.0kb downstream 10.0kb downstream 317 true scaffold_14: 146824-147140 Setaria italica
Seita.J021700 10.0kb downstream 10.0kb downstream 2 false scaffold_14: 147139-147140 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029219 5273 Angiosperm View MSA
122193578 5267 Panicoideae View MSA
124589200 5269 Grass View MSA
121350819 5274 Embryophyte View MSA
123381895 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.261        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.14        
cufflinks 0.163        
cufflinks 0.547        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.179        
cufflinks 0.077     Low Low
cufflinks 0.117        
cufflinks 1.568       High
cufflinks 0.435        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.317        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.052     Low Low
cufflinks 0.509        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.283       High
cufflinks 0.391        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain