Gene : Seita.2G000200 S. italica v2.2
Defline:  (1 of 1) PTHR30546//PTHR30546:SF4 - FLAVODOXIN-RELATED PROTEIN WRBA-RELATED Genomic Order:  2
Name:  ? Seita.2G000200 Secondary Identifier:  ? PAC:32720800
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7279 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G000200 0.5kb upstream 0.5kb upstream 1445 true scaffold_2: 8866-10310 Setaria italica
Seita.2G000200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 9811-10310 Setaria italica
Seita.2G000200 0.5kb downstream 0.5kb downstream 1445 true scaffold_2: 8366-9810 Setaria italica
Seita.2G000200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8366-8865 Setaria italica
Seita.2G000200 1.0kb upstream 1.0kb upstream 1945 true scaffold_2: 8866-10810 Setaria italica
Seita.2G000200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 9811-10810 Setaria italica
Seita.2G000200 1.0kb downstream 1.0kb downstream 1945 true scaffold_2: 7866-9810 Setaria italica
Seita.2G000200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 7866-8865 Setaria italica
Seita.2G000200 2.0kb upstream 2.0kb upstream 2945 true scaffold_2: 8866-11810 Setaria italica
Seita.2G000200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 9811-11810 Setaria italica
Seita.2G000200 2.0kb downstream 2.0kb downstream 2945 true scaffold_2: 6866-9810 Setaria italica
Seita.2G000200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 6866-8865 Setaria italica
Seita.2G000200 5.0kb upstream 5.0kb upstream 5945 true scaffold_2: 8866-14810 Setaria italica
Seita.2G000200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 9811-14810 Setaria italica
Seita.2G000200 5.0kb downstream 5.0kb downstream 5945 true scaffold_2: 3866-9810 Setaria italica
Seita.2G000200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3866-8865 Setaria italica
Seita.2G000200 10.0kb upstream 10.0kb upstream 10945 true scaffold_2: 8866-19810 Setaria italica
Seita.2G000200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 9811-19810 Setaria italica
Seita.2G000200 10.0kb downstream 10.0kb downstream 9810 true scaffold_2: 1-9810 Setaria italica
Seita.2G000200 10.0kb downstream 10.0kb downstream 8865 false scaffold_2: 1-8865 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994085 5273 Angiosperm View MSA
122189559 5267 Panicoideae View MSA
124582829 5269 Grass View MSA
121352058 5274 Embryophyte View MSA
123428089 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.145        
cufflinks 0.205        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.135        
cufflinks 0.046     Low Low
cufflinks 0.067     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.841       High
cufflinks 0.777        
cufflinks 2.735        
cufflinks 1.888        
cufflinks 0.208        
cufflinks 2.592        
cufflinks 0.043     Low Low
cufflinks 9.168       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.17        
cufflinks 5.356       High

0 Strain