Gene : Seita.2G005700 S. italica v2.2
Defline:  (1 of 3) PTHR10264:SF69 - HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 4 Genomic Order:  57
Name:  ? Seita.2G005700 Secondary Identifier:  ? PAC:32721890
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G005700 0.5kb upstream 0.5kb upstream 2469 true scaffold_2: 342926-345394 Setaria italica
Seita.2G005700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 342926-343425 Setaria italica
Seita.2G005700 0.5kb downstream 0.5kb downstream 2469 true scaffold_2: 343426-345894 Setaria italica
Seita.2G005700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 345395-345894 Setaria italica
Seita.2G005700 1.0kb upstream 1.0kb upstream 2969 true scaffold_2: 342426-345394 Setaria italica
Seita.2G005700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 342426-343425 Setaria italica
Seita.2G005700 1.0kb downstream 1.0kb downstream 2969 true scaffold_2: 343426-346394 Setaria italica
Seita.2G005700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 345395-346394 Setaria italica
Seita.2G005700 2.0kb upstream 2.0kb upstream 3969 true scaffold_2: 341426-345394 Setaria italica
Seita.2G005700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 341426-343425 Setaria italica
Seita.2G005700 2.0kb downstream 2.0kb downstream 3969 true scaffold_2: 343426-347394 Setaria italica
Seita.2G005700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 345395-347394 Setaria italica
Seita.2G005700 5.0kb upstream 5.0kb upstream 6969 true scaffold_2: 338426-345394 Setaria italica
Seita.2G005700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 338426-343425 Setaria italica
Seita.2G005700 5.0kb downstream 5.0kb downstream 6969 true scaffold_2: 343426-350394 Setaria italica
Seita.2G005700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 345395-350394 Setaria italica
Seita.2G005700 10.0kb upstream 10.0kb upstream 11969 true scaffold_2: 333426-345394 Setaria italica
Seita.2G005700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 333426-343425 Setaria italica
Seita.2G005700 10.0kb downstream 10.0kb downstream 11969 true scaffold_2: 343426-355394 Setaria italica
Seita.2G005700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 345395-355394 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027594 5273 Angiosperm View MSA
122118359 5267 Panicoideae View MSA
124591773 5269 Grass View MSA
121348601 5274 Embryophyte View MSA
123427890 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.899        
cufflinks 4.063        
cufflinks 5.817       High
cufflinks 7.245       High
cufflinks 4.322        
cufflinks 3.746        
cufflinks 2.834        
cufflinks 2.113       Low
cufflinks 1.857       Low
cufflinks 1.259       Low
cufflinks 2.632        
cufflinks 4.852        
cufflinks 3.379        
cufflinks 7.482       High
cufflinks 3.852        
cufflinks 3.937        
cufflinks 3.629        
cufflinks 4.122        
cufflinks 4.727        
cufflinks 4.625        

0 Strain