Gene : Seita.2G018900 S. italica v2.2
Defline:  (1 of 2) PTHR12741:SF5 - CALLOSE SYNTHASE 10 Genomic Order:  189
Name:  ? Seita.2G018900 Secondary Identifier:  ? PAC:32718074
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6773 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G018900 0.5kb upstream 0.5kb upstream 3829 true scaffold_2: 1512780-1516608 Setaria italica
Seita.2G018900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 1516109-1516608 Setaria italica
Seita.2G018900 0.5kb downstream 0.5kb downstream 3829 true scaffold_2: 1512280-1516108 Setaria italica
Seita.2G018900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 1512280-1512779 Setaria italica
Seita.2G018900 1.0kb upstream 1.0kb upstream 4329 true scaffold_2: 1512780-1517108 Setaria italica
Seita.2G018900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 1516109-1517108 Setaria italica
Seita.2G018900 1.0kb downstream 1.0kb downstream 4329 true scaffold_2: 1511780-1516108 Setaria italica
Seita.2G018900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 1511780-1512779 Setaria italica
Seita.2G018900 2.0kb upstream 2.0kb upstream 5329 true scaffold_2: 1512780-1518108 Setaria italica
Seita.2G018900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 1516109-1518108 Setaria italica
Seita.2G018900 2.0kb downstream 2.0kb downstream 5329 true scaffold_2: 1510780-1516108 Setaria italica
Seita.2G018900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 1510780-1512779 Setaria italica
Seita.2G018900 5.0kb upstream 5.0kb upstream 8329 true scaffold_2: 1512780-1521108 Setaria italica
Seita.2G018900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 1516109-1521108 Setaria italica
Seita.2G018900 5.0kb downstream 5.0kb downstream 8329 true scaffold_2: 1507780-1516108 Setaria italica
Seita.2G018900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 1507780-1512779 Setaria italica
Seita.2G018900 10.0kb upstream 10.0kb upstream 13329 true scaffold_2: 1512780-1526108 Setaria italica
Seita.2G018900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 1516109-1526108 Setaria italica
Seita.2G018900 10.0kb downstream 10.0kb downstream 13329 true scaffold_2: 1502780-1516108 Setaria italica
Seita.2G018900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 1502780-1512779 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198297 5267 Panicoideae View MSA
124589873 5269 Grass View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.11     Low  
cufflinks 0.12        
cufflinks 0.14       High
cufflinks 0.022     Low Low
cufflinks 0.039     Low Low
cufflinks 0.07     Low  
cufflinks 0.044     Low  
cufflinks 0.071     Low  
cufflinks 0.048     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.084     Low  
cufflinks 0.04     Low Low
cufflinks 0.041     Low Low
cufflinks 0.149       High
cufflinks 0.145       High
cufflinks 0.053     Low  
cufflinks 0.1     Low  
cufflinks 0.128       High
cufflinks 0.077     Low  
cufflinks 0.063     Low  

0 Strain