Gene : Seita.2G028300 S. italica v2.2
Defline:  (1 of 4) 1.1.1.205 - IMP dehydrogenase / Inosinic acid dehydrogenase Genomic Order:  283
Name:  ? Seita.2G028300 Secondary Identifier:  ? PAC:32718673
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5695 Setaria italica pathologic  
Sitalica PWY-6596 Setaria italica pathologic  
Sitalica PWY-7221 Setaria italica pathologic  
Sitalica PWY-7228 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G028300 0.5kb upstream 0.5kb upstream 4675 true scaffold_2: 2324787-2329461 Setaria italica
Seita.2G028300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2324787-2325286 Setaria italica
Seita.2G028300 0.5kb downstream 0.5kb downstream 4675 true scaffold_2: 2325287-2329961 Setaria italica
Seita.2G028300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2329462-2329961 Setaria italica
Seita.2G028300 1.0kb upstream 1.0kb upstream 5175 true scaffold_2: 2324287-2329461 Setaria italica
Seita.2G028300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2324287-2325286 Setaria italica
Seita.2G028300 1.0kb downstream 1.0kb downstream 5175 true scaffold_2: 2325287-2330461 Setaria italica
Seita.2G028300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2329462-2330461 Setaria italica
Seita.2G028300 2.0kb upstream 2.0kb upstream 6175 true scaffold_2: 2323287-2329461 Setaria italica
Seita.2G028300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2323287-2325286 Setaria italica
Seita.2G028300 2.0kb downstream 2.0kb downstream 6175 true scaffold_2: 2325287-2331461 Setaria italica
Seita.2G028300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2329462-2331461 Setaria italica
Seita.2G028300 5.0kb upstream 5.0kb upstream 9175 true scaffold_2: 2320287-2329461 Setaria italica
Seita.2G028300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2320287-2325286 Setaria italica
Seita.2G028300 5.0kb downstream 5.0kb downstream 9175 true scaffold_2: 2325287-2334461 Setaria italica
Seita.2G028300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2329462-2334461 Setaria italica
Seita.2G028300 10.0kb upstream 10.0kb upstream 14175 true scaffold_2: 2315287-2329461 Setaria italica
Seita.2G028300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2315287-2325286 Setaria italica
Seita.2G028300 10.0kb downstream 10.0kb downstream 14175 true scaffold_2: 2325287-2339461 Setaria italica
Seita.2G028300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2329462-2339461 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192238 5267 Panicoideae View MSA
124577772 5269 Grass View MSA
122042253 5273 Angiosperm View MSA
121346920 5274 Embryophyte View MSA
123424189 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.004     Low Low
cufflinks 0.726        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.734        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.005     Low Low
cufflinks 0.433        
cufflinks 0.003     Low Low
cufflinks 2.454        
cufflinks 0.969        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.149        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.487       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low Low
cufflinks 4.396       High

0 Strain