Gene : Seita.2G030900 S. italica v2.2
Defline:  (1 of 1) PTHR19384//PTHR19384:SF78 - FLAVODOXIN-RELATED Genomic Order:  309
Name:  ? Seita.2G030900 Secondary Identifier:  ? PAC:32721409
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PHOTOALL-PWY Setaria italica pathologic  
Sitalica PWY-101 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G030900 0.5kb upstream 0.5kb upstream 4451 true scaffold_2: 2482914-2487364 Setaria italica
Seita.2G030900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2486865-2487364 Setaria italica
Seita.2G030900 0.5kb downstream 0.5kb downstream 4451 true scaffold_2: 2482414-2486864 Setaria italica
Seita.2G030900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2482414-2482913 Setaria italica
Seita.2G030900 1.0kb upstream 1.0kb upstream 4951 true scaffold_2: 2482914-2487864 Setaria italica
Seita.2G030900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2486865-2487864 Setaria italica
Seita.2G030900 1.0kb downstream 1.0kb downstream 4951 true scaffold_2: 2481914-2486864 Setaria italica
Seita.2G030900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2481914-2482913 Setaria italica
Seita.2G030900 2.0kb upstream 2.0kb upstream 5951 true scaffold_2: 2482914-2488864 Setaria italica
Seita.2G030900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2486865-2488864 Setaria italica
Seita.2G030900 2.0kb downstream 2.0kb downstream 5951 true scaffold_2: 2480914-2486864 Setaria italica
Seita.2G030900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2480914-2482913 Setaria italica
Seita.2G030900 5.0kb upstream 5.0kb upstream 8951 true scaffold_2: 2482914-2491864 Setaria italica
Seita.2G030900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2486865-2491864 Setaria italica
Seita.2G030900 5.0kb downstream 5.0kb downstream 8951 true scaffold_2: 2477914-2486864 Setaria italica
Seita.2G030900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2477914-2482913 Setaria italica
Seita.2G030900 10.0kb upstream 10.0kb upstream 13951 true scaffold_2: 2482914-2496864 Setaria italica
Seita.2G030900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2486865-2496864 Setaria italica
Seita.2G030900 10.0kb downstream 10.0kb downstream 13951 true scaffold_2: 2472914-2486864 Setaria italica
Seita.2G030900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2472914-2482913 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182750 5267 Panicoideae View MSA
124591043 5269 Grass View MSA
122045006 5273 Angiosperm View MSA
121347443 5274 Embryophyte View MSA
123424825 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.202        
cufflinks 9.972        
cufflinks 2.458       Low
cufflinks 1.594       Low
cufflinks 2.926       Low
cufflinks 8.397        
cufflinks 14.141     High High
cufflinks 18.174     High High
cufflinks 17.683     High High
cufflinks 4.682        
cufflinks 5.123        
cufflinks 6.65        
cufflinks 8.508        
cufflinks 4.574        
cufflinks 7.522        
cufflinks 5.289        
cufflinks 7.353        
cufflinks 2.22       Low
cufflinks 3.809        
cufflinks 9.123        

0 Strain