Gene : Seita.2G030700 S. italica v2.2
Genomic Order:  307 Name:  ? Seita.2G030700
Secondary Identifier:  ? PAC:32722145
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G030700 0.5kb upstream 0.5kb upstream 6638 true scaffold_2: 2475744-2482381 Setaria italica
Seita.2G030700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2481882-2482381 Setaria italica
Seita.2G030700 0.5kb downstream 0.5kb downstream 6638 true scaffold_2: 2475244-2481881 Setaria italica
Seita.2G030700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2475244-2475743 Setaria italica
Seita.2G030700 1.0kb upstream 1.0kb upstream 7138 true scaffold_2: 2475744-2482881 Setaria italica
Seita.2G030700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2481882-2482881 Setaria italica
Seita.2G030700 1.0kb downstream 1.0kb downstream 7138 true scaffold_2: 2474744-2481881 Setaria italica
Seita.2G030700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2474744-2475743 Setaria italica
Seita.2G030700 2.0kb upstream 2.0kb upstream 8138 true scaffold_2: 2475744-2483881 Setaria italica
Seita.2G030700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2481882-2483881 Setaria italica
Seita.2G030700 2.0kb downstream 2.0kb downstream 8138 true scaffold_2: 2473744-2481881 Setaria italica
Seita.2G030700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2473744-2475743 Setaria italica
Seita.2G030700 5.0kb upstream 5.0kb upstream 11138 true scaffold_2: 2475744-2486881 Setaria italica
Seita.2G030700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2481882-2486881 Setaria italica
Seita.2G030700 5.0kb downstream 5.0kb downstream 11138 true scaffold_2: 2470744-2481881 Setaria italica
Seita.2G030700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2470744-2475743 Setaria italica
Seita.2G030700 10.0kb upstream 10.0kb upstream 16138 true scaffold_2: 2475744-2491881 Setaria italica
Seita.2G030700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2481882-2491881 Setaria italica
Seita.2G030700 10.0kb downstream 10.0kb downstream 16138 true scaffold_2: 2465744-2481881 Setaria italica
Seita.2G030700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2465744-2475743 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041414 5273 Angiosperm View MSA
122192385 5267 Panicoideae View MSA
124583158 5269 Grass View MSA
121349870 5274 Embryophyte View MSA
123381480 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.989        
cufflinks 4.227       High
cufflinks 3.113        
cufflinks 2.267        
cufflinks 2.64        
cufflinks 4.329       High
cufflinks 3.883        
cufflinks 1.501       Low
cufflinks 2.359        
cufflinks 0.905       Low
cufflinks 2.205        
cufflinks 1.473       Low
cufflinks 2.123        
cufflinks 2.249        
cufflinks 2.708        
cufflinks 7.548       High
cufflinks 1.931        
cufflinks 2.477        
cufflinks 3.42        
cufflinks 2.179        

0 Strain