Gene : Seita.2G031600 S. italica v2.2
Defline:  (1 of 1) PTHR32227:SF51 - CARBOHYDRATE-BINDING X8 DOMAIN-CONTAINING PROTEIN Genomic Order:  316
Name:  ? Seita.2G031600 Secondary Identifier:  ? PAC:32722678
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G031600 0.5kb upstream 0.5kb upstream 1131 true scaffold_2: 2538633-2539763 Setaria italica
Seita.2G031600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 2539264-2539763 Setaria italica
Seita.2G031600 0.5kb downstream 0.5kb downstream 1131 true scaffold_2: 2538133-2539263 Setaria italica
Seita.2G031600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 2538133-2538632 Setaria italica
Seita.2G031600 1.0kb upstream 1.0kb upstream 1631 true scaffold_2: 2538633-2540263 Setaria italica
Seita.2G031600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 2539264-2540263 Setaria italica
Seita.2G031600 1.0kb downstream 1.0kb downstream 1631 true scaffold_2: 2537633-2539263 Setaria italica
Seita.2G031600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 2537633-2538632 Setaria italica
Seita.2G031600 2.0kb upstream 2.0kb upstream 2631 true scaffold_2: 2538633-2541263 Setaria italica
Seita.2G031600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 2539264-2541263 Setaria italica
Seita.2G031600 2.0kb downstream 2.0kb downstream 2631 true scaffold_2: 2536633-2539263 Setaria italica
Seita.2G031600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 2536633-2538632 Setaria italica
Seita.2G031600 5.0kb upstream 5.0kb upstream 5631 true scaffold_2: 2538633-2544263 Setaria italica
Seita.2G031600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 2539264-2544263 Setaria italica
Seita.2G031600 5.0kb downstream 5.0kb downstream 5631 true scaffold_2: 2533633-2539263 Setaria italica
Seita.2G031600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 2533633-2538632 Setaria italica
Seita.2G031600 10.0kb upstream 10.0kb upstream 10631 true scaffold_2: 2538633-2549263 Setaria italica
Seita.2G031600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 2539264-2549263 Setaria italica
Seita.2G031600 10.0kb downstream 10.0kb downstream 10631 true scaffold_2: 2528633-2539263 Setaria italica
Seita.2G031600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 2528633-2538632 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196723 5267 Panicoideae View MSA
124581988 5269 Grass View MSA
122050272 5273 Angiosperm View MSA
123429175 5275 Viridiplantae View MSA
121349342 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.394        
cufflinks 1.571        
cufflinks 0.335        
cufflinks 0.195       Low
cufflinks 0.058     Low Low
cufflinks 1.874        
cufflinks 0.697        
cufflinks 1.171        
cufflinks 1.332        
cufflinks 2.216        
cufflinks 1.118        
cufflinks 1.047        
cufflinks 2.218        
cufflinks 0.611        
cufflinks 2.025        
cufflinks 1.011        
cufflinks 1.423        
cufflinks 0.851        
cufflinks 0.121       Low
cufflinks 2.211        

0 Strain