Gene : Seita.2G036800 S. italica v2.2
Defline:  (1 of 1) PTHR10060:SF15 - DEOXYRIBONUCLEASE TATDN1-RELATED Genomic Order:  368
Name:  ? Seita.2G036800 Secondary Identifier:  ? PAC:32721179
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G036800 0.5kb upstream 0.5kb upstream 4118 true scaffold_2: 3067258-3071375 Setaria italica
Seita.2G036800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3067258-3067757 Setaria italica
Seita.2G036800 0.5kb downstream 0.5kb downstream 4118 true scaffold_2: 3067758-3071875 Setaria italica
Seita.2G036800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3071376-3071875 Setaria italica
Seita.2G036800 1.0kb upstream 1.0kb upstream 4618 true scaffold_2: 3066758-3071375 Setaria italica
Seita.2G036800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3066758-3067757 Setaria italica
Seita.2G036800 1.0kb downstream 1.0kb downstream 4618 true scaffold_2: 3067758-3072375 Setaria italica
Seita.2G036800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3071376-3072375 Setaria italica
Seita.2G036800 2.0kb upstream 2.0kb upstream 5618 true scaffold_2: 3065758-3071375 Setaria italica
Seita.2G036800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3065758-3067757 Setaria italica
Seita.2G036800 2.0kb downstream 2.0kb downstream 5618 true scaffold_2: 3067758-3073375 Setaria italica
Seita.2G036800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3071376-3073375 Setaria italica
Seita.2G036800 5.0kb upstream 5.0kb upstream 8618 true scaffold_2: 3062758-3071375 Setaria italica
Seita.2G036800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3062758-3067757 Setaria italica
Seita.2G036800 5.0kb downstream 5.0kb downstream 8618 true scaffold_2: 3067758-3076375 Setaria italica
Seita.2G036800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3071376-3076375 Setaria italica
Seita.2G036800 10.0kb upstream 10.0kb upstream 13618 true scaffold_2: 3057758-3071375 Setaria italica
Seita.2G036800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3057758-3067757 Setaria italica
Seita.2G036800 10.0kb downstream 10.0kb downstream 13618 true scaffold_2: 3067758-3081375 Setaria italica
Seita.2G036800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3071376-3081375 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189549 5267 Panicoideae View MSA
124574221 5269 Grass View MSA
122047373 5273 Angiosperm View MSA
121345564 5274 Embryophyte View MSA
123428718 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.408        
cufflinks 3.781        
cufflinks 1.908       Low
cufflinks 1.499       Low
cufflinks 2.303       Low
cufflinks 3.1        
cufflinks 2.855        
cufflinks 3.874        
cufflinks 4.991        
cufflinks 5.851       High
cufflinks 4.182        
cufflinks 5.326       High
cufflinks 3.86        
cufflinks 2.722        
cufflinks 5.07        
cufflinks 3.233        
cufflinks 5.887       High
cufflinks 3.347        
cufflinks 1.601       Low
cufflinks 5.251        

0 Strain