Gene : Seita.2G039300 S. italica v2.2
Defline:  (1 of 4) 1.3.1.22 - 3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)) / Cholestenone 5-alpha-reductase Genomic Order:  393
Name:  ? Seita.2G039300 Secondary Identifier:  ? PAC:32720556
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G039300 0.5kb upstream 0.5kb upstream 1955 true scaffold_2: 3235315-3237269 Setaria italica
Seita.2G039300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3236770-3237269 Setaria italica
Seita.2G039300 0.5kb downstream 0.5kb downstream 1955 true scaffold_2: 3234815-3236769 Setaria italica
Seita.2G039300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3234815-3235314 Setaria italica
Seita.2G039300 1.0kb upstream 1.0kb upstream 2455 true scaffold_2: 3235315-3237769 Setaria italica
Seita.2G039300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3236770-3237769 Setaria italica
Seita.2G039300 1.0kb downstream 1.0kb downstream 2455 true scaffold_2: 3234315-3236769 Setaria italica
Seita.2G039300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3234315-3235314 Setaria italica
Seita.2G039300 2.0kb upstream 2.0kb upstream 3455 true scaffold_2: 3235315-3238769 Setaria italica
Seita.2G039300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3236770-3238769 Setaria italica
Seita.2G039300 2.0kb downstream 2.0kb downstream 3455 true scaffold_2: 3233315-3236769 Setaria italica
Seita.2G039300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3233315-3235314 Setaria italica
Seita.2G039300 5.0kb upstream 5.0kb upstream 6455 true scaffold_2: 3235315-3241769 Setaria italica
Seita.2G039300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3236770-3241769 Setaria italica
Seita.2G039300 5.0kb downstream 5.0kb downstream 6455 true scaffold_2: 3230315-3236769 Setaria italica
Seita.2G039300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3230315-3235314 Setaria italica
Seita.2G039300 10.0kb upstream 10.0kb upstream 11455 true scaffold_2: 3235315-3246769 Setaria italica
Seita.2G039300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3236770-3246769 Setaria italica
Seita.2G039300 10.0kb downstream 10.0kb downstream 11455 true scaffold_2: 3225315-3236769 Setaria italica
Seita.2G039300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3225315-3235314 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195814 5267 Panicoideae View MSA
124574387 5269 Grass View MSA
122045974 5273 Angiosperm View MSA
121350714 5274 Embryophyte View MSA
123428210 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low Low
cufflinks 0.27        
cufflinks 0.135        
cufflinks 0.261        
cufflinks 0.58        
cufflinks 0.1     Low  
cufflinks 0.176        
cufflinks 0.887        
cufflinks 0.388        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low  
cufflinks 0.012     Low Low
cufflinks 0.045     Low  
cufflinks 0.219        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.481       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.009       High
cufflinks 0.023     Low Low

0 Strain