Gene : Seita.2G039800 S. italica v2.2
Defline:  (1 of 4) 1.3.1.22 - 3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)) / Cholestenone 5-alpha-reductase Genomic Order:  398
Name:  ? Seita.2G039800 Secondary Identifier:  ? PAC:32723240
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G039800 0.5kb upstream 0.5kb upstream 2137 true scaffold_2: 3252629-3254765 Setaria italica
Seita.2G039800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3252629-3253128 Setaria italica
Seita.2G039800 0.5kb downstream 0.5kb downstream 2137 true scaffold_2: 3253129-3255265 Setaria italica
Seita.2G039800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3254766-3255265 Setaria italica
Seita.2G039800 1.0kb upstream 1.0kb upstream 2637 true scaffold_2: 3252129-3254765 Setaria italica
Seita.2G039800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3252129-3253128 Setaria italica
Seita.2G039800 1.0kb downstream 1.0kb downstream 2637 true scaffold_2: 3253129-3255765 Setaria italica
Seita.2G039800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3254766-3255765 Setaria italica
Seita.2G039800 2.0kb upstream 2.0kb upstream 3637 true scaffold_2: 3251129-3254765 Setaria italica
Seita.2G039800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3251129-3253128 Setaria italica
Seita.2G039800 2.0kb downstream 2.0kb downstream 3637 true scaffold_2: 3253129-3256765 Setaria italica
Seita.2G039800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3254766-3256765 Setaria italica
Seita.2G039800 5.0kb upstream 5.0kb upstream 6637 true scaffold_2: 3248129-3254765 Setaria italica
Seita.2G039800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3248129-3253128 Setaria italica
Seita.2G039800 5.0kb downstream 5.0kb downstream 6637 true scaffold_2: 3253129-3259765 Setaria italica
Seita.2G039800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3254766-3259765 Setaria italica
Seita.2G039800 10.0kb upstream 10.0kb upstream 11637 true scaffold_2: 3243129-3254765 Setaria italica
Seita.2G039800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3243129-3253128 Setaria italica
Seita.2G039800 10.0kb downstream 10.0kb downstream 11637 true scaffold_2: 3253129-3264765 Setaria italica
Seita.2G039800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3254766-3264765 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195814 5267 Panicoideae View MSA
124574387 5269 Grass View MSA
122045974 5273 Angiosperm View MSA
121350714 5274 Embryophyte View MSA
123428210 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.612        
cufflinks 0.301       Low
cufflinks 0.655       Low
cufflinks 2.307        
cufflinks 3.267        
cufflinks 0.392       Low
cufflinks 1.394        
cufflinks 3.895        
cufflinks 3.226        
cufflinks 24.843     High High
cufflinks 8.741        
cufflinks 11.511        
cufflinks 16.494     High High
cufflinks 4.291        
cufflinks 5.63        
cufflinks 0.711       Low
cufflinks 10.777        
cufflinks 1.768        
cufflinks 1.589        
cufflinks 17.182     High High

0 Strain