Gene : Seita.2G042600 S. italica v2.2
Defline:  (1 of 1) PTHR10625:SF120 - HISTONE DEACETYLASE 15 Genomic Order:  426
Name:  ? Seita.2G042600 Secondary Identifier:  ? PAC:32722344
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G042600 0.5kb upstream 0.5kb upstream 9842 true scaffold_2: 3436166-3446007 Setaria italica
Seita.2G042600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3445508-3446007 Setaria italica
Seita.2G042600 0.5kb downstream 0.5kb downstream 9842 true scaffold_2: 3435666-3445507 Setaria italica
Seita.2G042600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3435666-3436165 Setaria italica
Seita.2G042600 1.0kb upstream 1.0kb upstream 10342 true scaffold_2: 3436166-3446507 Setaria italica
Seita.2G042600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3445508-3446507 Setaria italica
Seita.2G042600 1.0kb downstream 1.0kb downstream 10342 true scaffold_2: 3435166-3445507 Setaria italica
Seita.2G042600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3435166-3436165 Setaria italica
Seita.2G042600 2.0kb upstream 2.0kb upstream 11342 true scaffold_2: 3436166-3447507 Setaria italica
Seita.2G042600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3445508-3447507 Setaria italica
Seita.2G042600 2.0kb downstream 2.0kb downstream 11342 true scaffold_2: 3434166-3445507 Setaria italica
Seita.2G042600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3434166-3436165 Setaria italica
Seita.2G042600 5.0kb upstream 5.0kb upstream 14342 true scaffold_2: 3436166-3450507 Setaria italica
Seita.2G042600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3445508-3450507 Setaria italica
Seita.2G042600 5.0kb downstream 5.0kb downstream 14342 true scaffold_2: 3431166-3445507 Setaria italica
Seita.2G042600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3431166-3436165 Setaria italica
Seita.2G042600 10.0kb upstream 10.0kb upstream 19342 true scaffold_2: 3436166-3455507 Setaria italica
Seita.2G042600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3445508-3455507 Setaria italica
Seita.2G042600 10.0kb downstream 10.0kb downstream 19342 true scaffold_2: 3426166-3445507 Setaria italica
Seita.2G042600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3426166-3436165 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180667 5267 Panicoideae View MSA
124578938 5269 Grass View MSA
122044856 5273 Angiosperm View MSA
121349302 5274 Embryophyte View MSA
123428156 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.848       High
cufflinks 4.299       High
cufflinks 2.479        
cufflinks 1.753       Low
cufflinks 1.851       Low
cufflinks 4.835       High
cufflinks 3.134        
cufflinks 2.829        
cufflinks 3.05        
cufflinks 2.54        
cufflinks 3.124        
cufflinks 2.654        
cufflinks 2.973        
cufflinks 3.242        
cufflinks 3.51        
cufflinks 3.493        
cufflinks 3.187        
cufflinks 3.594        
cufflinks 1.784       Low
cufflinks 2.696        

0 Strain