Gene : Seita.2G041500 S. italica v2.2
Defline:  (1 of 3) PTHR23024//PTHR23024:SF162 - MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES Genomic Order:  415
Name:  ? Seita.2G041500 Secondary Identifier:  ? PAC:32723302
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6303 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G041500 0.5kb upstream 0.5kb upstream 2116 true scaffold_2: 3364244-3366359 Setaria italica
Seita.2G041500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3364244-3364743 Setaria italica
Seita.2G041500 0.5kb downstream 0.5kb downstream 2116 true scaffold_2: 3364744-3366859 Setaria italica
Seita.2G041500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3366360-3366859 Setaria italica
Seita.2G041500 1.0kb upstream 1.0kb upstream 2616 true scaffold_2: 3363744-3366359 Setaria italica
Seita.2G041500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3363744-3364743 Setaria italica
Seita.2G041500 1.0kb downstream 1.0kb downstream 2616 true scaffold_2: 3364744-3367359 Setaria italica
Seita.2G041500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3366360-3367359 Setaria italica
Seita.2G041500 2.0kb upstream 2.0kb upstream 3616 true scaffold_2: 3362744-3366359 Setaria italica
Seita.2G041500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3362744-3364743 Setaria italica
Seita.2G041500 2.0kb downstream 2.0kb downstream 3616 true scaffold_2: 3364744-3368359 Setaria italica
Seita.2G041500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3366360-3368359 Setaria italica
Seita.2G041500 5.0kb upstream 5.0kb upstream 6616 true scaffold_2: 3359744-3366359 Setaria italica
Seita.2G041500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3359744-3364743 Setaria italica
Seita.2G041500 5.0kb downstream 5.0kb downstream 6616 true scaffold_2: 3364744-3371359 Setaria italica
Seita.2G041500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3366360-3371359 Setaria italica
Seita.2G041500 10.0kb upstream 10.0kb upstream 11616 true scaffold_2: 3354744-3366359 Setaria italica
Seita.2G041500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3354744-3364743 Setaria italica
Seita.2G041500 10.0kb downstream 10.0kb downstream 11616 true scaffold_2: 3364744-3376359 Setaria italica
Seita.2G041500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3366360-3376359 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177119 5267 Panicoideae View MSA
124584166 5269 Grass View MSA
122047300 5273 Angiosperm View MSA
123428915 5275 Viridiplantae View MSA
121350136 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.41        
cufflinks 0.029     Low Low
cufflinks 1.009        
cufflinks 1.787       High
cufflinks 1.535        
cufflinks 0.055     Low  
cufflinks 0.149        
cufflinks 1.218        
cufflinks 1.426        
cufflinks 0.067     Low  
cufflinks 0.091     Low  
cufflinks 0.113     Low  
cufflinks 0.397        
cufflinks 1.048        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low Low
cufflinks 0.01     Low Low
cufflinks 3.159       High
cufflinks 0.737        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain