Gene : Seita.2G041600 S. italica v2.2
Defline:  (1 of 3) PTHR23024//PTHR23024:SF162 - MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES Genomic Order:  416
Name:  ? Seita.2G041600 Secondary Identifier:  ? PAC:32719380
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6303 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G041600 0.5kb upstream 0.5kb upstream 1559 true scaffold_2: 3370769-3372327 Setaria italica
Seita.2G041600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3371828-3372327 Setaria italica
Seita.2G041600 0.5kb downstream 0.5kb downstream 1559 true scaffold_2: 3370269-3371827 Setaria italica
Seita.2G041600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3370269-3370768 Setaria italica
Seita.2G041600 1.0kb upstream 1.0kb upstream 2059 true scaffold_2: 3370769-3372827 Setaria italica
Seita.2G041600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3371828-3372827 Setaria italica
Seita.2G041600 1.0kb downstream 1.0kb downstream 2059 true scaffold_2: 3369769-3371827 Setaria italica
Seita.2G041600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3369769-3370768 Setaria italica
Seita.2G041600 2.0kb upstream 2.0kb upstream 3059 true scaffold_2: 3370769-3373827 Setaria italica
Seita.2G041600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3371828-3373827 Setaria italica
Seita.2G041600 2.0kb downstream 2.0kb downstream 3059 true scaffold_2: 3368769-3371827 Setaria italica
Seita.2G041600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3368769-3370768 Setaria italica
Seita.2G041600 5.0kb upstream 5.0kb upstream 6059 true scaffold_2: 3370769-3376827 Setaria italica
Seita.2G041600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3371828-3376827 Setaria italica
Seita.2G041600 5.0kb downstream 5.0kb downstream 6059 true scaffold_2: 3365769-3371827 Setaria italica
Seita.2G041600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3365769-3370768 Setaria italica
Seita.2G041600 10.0kb upstream 10.0kb upstream 11059 true scaffold_2: 3370769-3381827 Setaria italica
Seita.2G041600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3371828-3381827 Setaria italica
Seita.2G041600 10.0kb downstream 10.0kb downstream 11059 true scaffold_2: 3360769-3371827 Setaria italica
Seita.2G041600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3360769-3370768 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183341 5267 Panicoideae View MSA
124584166 5269 Grass View MSA
122047300 5273 Angiosperm View MSA
123428915 5275 Viridiplantae View MSA
121350136 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.723        
cufflinks 0.134       Low
cufflinks 0.732        
cufflinks 0.623        
cufflinks 2.384        
cufflinks 0.104     Low Low
cufflinks 0.199       Low
cufflinks 0.512        
cufflinks 0.741        
cufflinks 0.34        
cufflinks 0.555        
cufflinks 1.806        
cufflinks 6.625       High
cufflinks 0.532        
cufflinks 8.176       High
cufflinks 0.224        
cufflinks 8.204       High
cufflinks 0.25        
cufflinks 0.387        
cufflinks 7.333       High

0 Strain