Gene : Seita.2G041700 S. italica v2.2
Defline:  (1 of 1) PTHR23024:SF102 - CARBOXYLESTERASE 15-RELATED Genomic Order:  417
Name:  ? Seita.2G041700 Secondary Identifier:  ? PAC:32722111
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6303 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G041700 0.5kb upstream 0.5kb upstream 1887 true scaffold_2: 3378310-3380196 Setaria italica
Seita.2G041700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3379697-3380196 Setaria italica
Seita.2G041700 0.5kb downstream 0.5kb downstream 1887 true scaffold_2: 3377810-3379696 Setaria italica
Seita.2G041700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3377810-3378309 Setaria italica
Seita.2G041700 1.0kb upstream 1.0kb upstream 2387 true scaffold_2: 3378310-3380696 Setaria italica
Seita.2G041700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3379697-3380696 Setaria italica
Seita.2G041700 1.0kb downstream 1.0kb downstream 2387 true scaffold_2: 3377310-3379696 Setaria italica
Seita.2G041700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3377310-3378309 Setaria italica
Seita.2G041700 2.0kb upstream 2.0kb upstream 3387 true scaffold_2: 3378310-3381696 Setaria italica
Seita.2G041700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3379697-3381696 Setaria italica
Seita.2G041700 2.0kb downstream 2.0kb downstream 3387 true scaffold_2: 3376310-3379696 Setaria italica
Seita.2G041700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3376310-3378309 Setaria italica
Seita.2G041700 5.0kb upstream 5.0kb upstream 6387 true scaffold_2: 3378310-3384696 Setaria italica
Seita.2G041700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3379697-3384696 Setaria italica
Seita.2G041700 5.0kb downstream 5.0kb downstream 6387 true scaffold_2: 3373310-3379696 Setaria italica
Seita.2G041700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3373310-3378309 Setaria italica
Seita.2G041700 10.0kb upstream 10.0kb upstream 11387 true scaffold_2: 3378310-3389696 Setaria italica
Seita.2G041700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3379697-3389696 Setaria italica
Seita.2G041700 10.0kb downstream 10.0kb downstream 11387 true scaffold_2: 3368310-3379696 Setaria italica
Seita.2G041700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3368310-3378309 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181607 5267 Panicoideae View MSA
124582890 5269 Grass View MSA
122047300 5273 Angiosperm View MSA
123428915 5275 Viridiplantae View MSA
121350136 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.744        
cufflinks 4.832        
cufflinks 9.361        
cufflinks 15.054     High High
cufflinks 7.878        
cufflinks 5.268        
cufflinks 0.995       Low
cufflinks 3.673        
cufflinks 2.795        
cufflinks 7.408        
cufflinks 2.973        
cufflinks 1.004       Low
cufflinks 5.939        
cufflinks 13.416       High
cufflinks 5.555        
cufflinks 0.661       Low
cufflinks 4.026        
cufflinks 0.624       Low
cufflinks 11.043       High
cufflinks 2.45        

0 Strain