Gene : Seita.2G046000 S. italica v2.2
Defline:  (1 of 2) 1.2.4.4 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) / Dehydrogenase, branched chain alpha-keto acid Genomic Order:  460
Name:  ? Seita.2G046000 Secondary Identifier:  ? PAC:32721591
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5046 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G046000 0.5kb upstream 0.5kb upstream 4554 true scaffold_2: 3700812-3705365 Setaria italica
Seita.2G046000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3704866-3705365 Setaria italica
Seita.2G046000 0.5kb downstream 0.5kb downstream 4554 true scaffold_2: 3700312-3704865 Setaria italica
Seita.2G046000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3700312-3700811 Setaria italica
Seita.2G046000 1.0kb upstream 1.0kb upstream 5054 true scaffold_2: 3700812-3705865 Setaria italica
Seita.2G046000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3704866-3705865 Setaria italica
Seita.2G046000 1.0kb downstream 1.0kb downstream 5054 true scaffold_2: 3699812-3704865 Setaria italica
Seita.2G046000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3699812-3700811 Setaria italica
Seita.2G046000 2.0kb upstream 2.0kb upstream 6054 true scaffold_2: 3700812-3706865 Setaria italica
Seita.2G046000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3704866-3706865 Setaria italica
Seita.2G046000 2.0kb downstream 2.0kb downstream 6054 true scaffold_2: 3698812-3704865 Setaria italica
Seita.2G046000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3698812-3700811 Setaria italica
Seita.2G046000 5.0kb upstream 5.0kb upstream 9054 true scaffold_2: 3700812-3709865 Setaria italica
Seita.2G046000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3704866-3709865 Setaria italica
Seita.2G046000 5.0kb downstream 5.0kb downstream 9054 true scaffold_2: 3695812-3704865 Setaria italica
Seita.2G046000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3695812-3700811 Setaria italica
Seita.2G046000 10.0kb upstream 10.0kb upstream 14054 true scaffold_2: 3700812-3714865 Setaria italica
Seita.2G046000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3704866-3714865 Setaria italica
Seita.2G046000 10.0kb downstream 10.0kb downstream 14054 true scaffold_2: 3690812-3704865 Setaria italica
Seita.2G046000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3690812-3700811 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195911 5267 Panicoideae View MSA
124570574 5269 Grass View MSA
122046166 5273 Angiosperm View MSA
121344271 5274 Embryophyte View MSA
123424966 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.045     High  
cufflinks 8.494       Low
cufflinks 141.3     High High
cufflinks 166.771     High High
cufflinks 82.327     High High
cufflinks 10.011       Low
cufflinks 16.496     High  
cufflinks 37.082     High  
cufflinks 30.525     High  
cufflinks 18.798     High  
cufflinks 17.419     High  
cufflinks 44.631     High  
cufflinks 34.028     High  
cufflinks 57.221     High  
cufflinks 7.394       Low
cufflinks 20.395     High  
cufflinks 21.509     High  
cufflinks 53.091     High  
cufflinks 90.191     High High
cufflinks 9.241       Low

0 Strain