Gene : Seita.2G126000 S. italica v2.2
Defline:  (1 of 1) PTHR22870:SF209 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MJK13 Genomic Order:  1260
Name:  ? Seita.2G126000 Secondary Identifier:  ? PAC:32720425
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G126000 0.5kb upstream 0.5kb upstream 5270 true scaffold_2: 14356260-14361529 Setaria italica
Seita.2G126000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 14356260-14356759 Setaria italica
Seita.2G126000 0.5kb downstream 0.5kb downstream 5270 true scaffold_2: 14356760-14362029 Setaria italica
Seita.2G126000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 14361530-14362029 Setaria italica
Seita.2G126000 1.0kb upstream 1.0kb upstream 5770 true scaffold_2: 14355760-14361529 Setaria italica
Seita.2G126000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 14355760-14356759 Setaria italica
Seita.2G126000 1.0kb downstream 1.0kb downstream 5770 true scaffold_2: 14356760-14362529 Setaria italica
Seita.2G126000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 14361530-14362529 Setaria italica
Seita.2G126000 2.0kb upstream 2.0kb upstream 6770 true scaffold_2: 14354760-14361529 Setaria italica
Seita.2G126000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 14354760-14356759 Setaria italica
Seita.2G126000 2.0kb downstream 2.0kb downstream 6770 true scaffold_2: 14356760-14363529 Setaria italica
Seita.2G126000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 14361530-14363529 Setaria italica
Seita.2G126000 5.0kb upstream 5.0kb upstream 9770 true scaffold_2: 14351760-14361529 Setaria italica
Seita.2G126000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 14351760-14356759 Setaria italica
Seita.2G126000 5.0kb downstream 5.0kb downstream 9770 true scaffold_2: 14356760-14366529 Setaria italica
Seita.2G126000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 14361530-14366529 Setaria italica
Seita.2G126000 10.0kb upstream 10.0kb upstream 14770 true scaffold_2: 14346760-14361529 Setaria italica
Seita.2G126000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 14346760-14356759 Setaria italica
Seita.2G126000 10.0kb downstream 10.0kb downstream 14770 true scaffold_2: 14356760-14371529 Setaria italica
Seita.2G126000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 14361530-14371529 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041443 5273 Angiosperm View MSA
122177088 5267 Panicoideae View MSA
124589794 5269 Grass View MSA
121345963 5274 Embryophyte View MSA
123428657 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.444        
cufflinks 8.421       Low
cufflinks 13.922     High  
cufflinks 14.477     High  
cufflinks 15.12     High  
cufflinks 9.605        
cufflinks 15.028     High  
cufflinks 12.454        
cufflinks 11.269        
cufflinks 6.604       Low
cufflinks 8.716       Low
cufflinks 11.157        
cufflinks 11.526        
cufflinks 19.383     High High
cufflinks 10.144        
cufflinks 19.787     High High
cufflinks 10.87        
cufflinks 13.145     High  
cufflinks 24.716     High High
cufflinks 9.52        

0 Strain