Gene : Seita.2G129300 S. italica v2.2
Defline:  (1 of 1) PTHR11353:SF99 - CHAPERONIN 60 SUBUNIT ALPHA 2, CHLOROPLASTIC Genomic Order:  1293
Name:  ? Seita.2G129300 Secondary Identifier:  ? PAC:32723503
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G129300 0.5kb upstream 0.5kb upstream 4344 true scaffold_2: 14956316-14960659 Setaria italica
Seita.2G129300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 14956316-14956815 Setaria italica
Seita.2G129300 0.5kb downstream 0.5kb downstream 4344 true scaffold_2: 14956816-14961159 Setaria italica
Seita.2G129300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 14960660-14961159 Setaria italica
Seita.2G129300 1.0kb upstream 1.0kb upstream 4844 true scaffold_2: 14955816-14960659 Setaria italica
Seita.2G129300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 14955816-14956815 Setaria italica
Seita.2G129300 1.0kb downstream 1.0kb downstream 4844 true scaffold_2: 14956816-14961659 Setaria italica
Seita.2G129300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 14960660-14961659 Setaria italica
Seita.2G129300 2.0kb upstream 2.0kb upstream 5844 true scaffold_2: 14954816-14960659 Setaria italica
Seita.2G129300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 14954816-14956815 Setaria italica
Seita.2G129300 2.0kb downstream 2.0kb downstream 5844 true scaffold_2: 14956816-14962659 Setaria italica
Seita.2G129300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 14960660-14962659 Setaria italica
Seita.2G129300 5.0kb upstream 5.0kb upstream 8844 true scaffold_2: 14951816-14960659 Setaria italica
Seita.2G129300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 14951816-14956815 Setaria italica
Seita.2G129300 5.0kb downstream 5.0kb downstream 8844 true scaffold_2: 14956816-14965659 Setaria italica
Seita.2G129300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 14960660-14965659 Setaria italica
Seita.2G129300 10.0kb upstream 10.0kb upstream 13844 true scaffold_2: 14946816-14960659 Setaria italica
Seita.2G129300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 14946816-14956815 Setaria italica
Seita.2G129300 10.0kb downstream 10.0kb downstream 13844 true scaffold_2: 14956816-14970659 Setaria italica
Seita.2G129300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 14960660-14970659 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185659 5267 Panicoideae View MSA
124589408 5269 Grass View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.976        
cufflinks 4.298       High
cufflinks 2.003        
cufflinks 0.897       Low
cufflinks 1.593        
cufflinks 5.245       High
cufflinks 2.075        
cufflinks 2.716        
cufflinks 5.269       High
cufflinks 1.248        
cufflinks 2.273        
cufflinks 1.633        
cufflinks 1.412        
cufflinks 3.107        
cufflinks 2.132        
cufflinks 1.028       Low
cufflinks 2.005        
cufflinks 0.878       Low
cufflinks 0.884       Low
cufflinks 2.227        

0 Strain