Gene : Seita.2G131400 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1314
Name:  ? Seita.2G131400 Secondary Identifier:  ? PAC:32721572
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G131400 0.5kb upstream 0.5kb upstream 4513 true scaffold_2: 15286021-15290533 Setaria italica
Seita.2G131400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 15286021-15286520 Setaria italica
Seita.2G131400 0.5kb downstream 0.5kb downstream 4513 true scaffold_2: 15286521-15291033 Setaria italica
Seita.2G131400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 15290534-15291033 Setaria italica
Seita.2G131400 1.0kb upstream 1.0kb upstream 5013 true scaffold_2: 15285521-15290533 Setaria italica
Seita.2G131400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 15285521-15286520 Setaria italica
Seita.2G131400 1.0kb downstream 1.0kb downstream 5013 true scaffold_2: 15286521-15291533 Setaria italica
Seita.2G131400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 15290534-15291533 Setaria italica
Seita.2G131400 2.0kb upstream 2.0kb upstream 6013 true scaffold_2: 15284521-15290533 Setaria italica
Seita.2G131400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 15284521-15286520 Setaria italica
Seita.2G131400 2.0kb downstream 2.0kb downstream 6013 true scaffold_2: 15286521-15292533 Setaria italica
Seita.2G131400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 15290534-15292533 Setaria italica
Seita.2G131400 5.0kb upstream 5.0kb upstream 9013 true scaffold_2: 15281521-15290533 Setaria italica
Seita.2G131400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 15281521-15286520 Setaria italica
Seita.2G131400 5.0kb downstream 5.0kb downstream 9013 true scaffold_2: 15286521-15295533 Setaria italica
Seita.2G131400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 15290534-15295533 Setaria italica
Seita.2G131400 10.0kb upstream 10.0kb upstream 14013 true scaffold_2: 15276521-15290533 Setaria italica
Seita.2G131400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 15276521-15286520 Setaria italica
Seita.2G131400 10.0kb downstream 10.0kb downstream 14013 true scaffold_2: 15286521-15300533 Setaria italica
Seita.2G131400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 15290534-15300533 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190917 5267 Panicoideae View MSA
124572729 5269 Grass View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.586        
cufflinks 2.689       High
cufflinks 1.632        
cufflinks 1.532        
cufflinks 1.489        
cufflinks 2.783       High
cufflinks 1.798        
cufflinks 2.622        
cufflinks 2.289        
cufflinks 1.024       Low
cufflinks 2.319        
cufflinks 1.85        
cufflinks 1.252       Low
cufflinks 2.038        
cufflinks 1.532        
cufflinks 2.784       High
cufflinks 2.205        
cufflinks 2.879       High
cufflinks 0.886       Low
cufflinks 1.724        

0 Strain