Gene : Seita.2G131600 S. italica v2.2
Defline:  (1 of 1) PTHR23019 - NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED Genomic Order:  1316
Name:  ? Seita.2G131600 Secondary Identifier:  ? PAC:32718863
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G131600 0.5kb upstream 0.5kb upstream 16137 true scaffold_2: 15304212-15320348 Setaria italica
Seita.2G131600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 15304212-15304711 Setaria italica
Seita.2G131600 0.5kb downstream 0.5kb downstream 16137 true scaffold_2: 15304712-15320848 Setaria italica
Seita.2G131600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 15320349-15320848 Setaria italica
Seita.2G131600 1.0kb upstream 1.0kb upstream 16637 true scaffold_2: 15303712-15320348 Setaria italica
Seita.2G131600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 15303712-15304711 Setaria italica
Seita.2G131600 1.0kb downstream 1.0kb downstream 16637 true scaffold_2: 15304712-15321348 Setaria italica
Seita.2G131600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 15320349-15321348 Setaria italica
Seita.2G131600 2.0kb upstream 2.0kb upstream 17637 true scaffold_2: 15302712-15320348 Setaria italica
Seita.2G131600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 15302712-15304711 Setaria italica
Seita.2G131600 2.0kb downstream 2.0kb downstream 17637 true scaffold_2: 15304712-15322348 Setaria italica
Seita.2G131600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 15320349-15322348 Setaria italica
Seita.2G131600 5.0kb upstream 5.0kb upstream 20637 true scaffold_2: 15299712-15320348 Setaria italica
Seita.2G131600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 15299712-15304711 Setaria italica
Seita.2G131600 5.0kb downstream 5.0kb downstream 20637 true scaffold_2: 15304712-15325348 Setaria italica
Seita.2G131600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 15320349-15325348 Setaria italica
Seita.2G131600 10.0kb upstream 10.0kb upstream 25637 true scaffold_2: 15294712-15320348 Setaria italica
Seita.2G131600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 15294712-15304711 Setaria italica
Seita.2G131600 10.0kb downstream 10.0kb downstream 25637 true scaffold_2: 15304712-15330348 Setaria italica
Seita.2G131600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 15320349-15330348 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180966 5267 Panicoideae View MSA
124581601 5269 Grass View MSA
122045642 5273 Angiosperm View MSA
121344134 5274 Embryophyte View MSA
123379983 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.639       High
cufflinks 4.596       High
cufflinks 0.695       Low
cufflinks 0.472       Low
cufflinks 0.631       Low
cufflinks 4.59       High
cufflinks 2.614        
cufflinks 1.467        
cufflinks 2.031        
cufflinks 1.773        
cufflinks 2.764        
cufflinks 1.873        
cufflinks 2.163        
cufflinks 1.384        
cufflinks 2.483        
cufflinks 2.769        
cufflinks 1.755        
cufflinks 2.652        
cufflinks 0.391       Low
cufflinks 2.248        

0 Strain