Gene : Seita.2G133600 S. italica v2.2
Defline:  (1 of 1) KOG0870 - DNA polymerase epsilon, subunit D Genomic Order:  1336
Name:  ? Seita.2G133600 Secondary Identifier:  ? PAC:32722092
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G133600 0.5kb upstream 0.5kb upstream 2432 true scaffold_2: 15465444-15467875 Setaria italica
Seita.2G133600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 15467376-15467875 Setaria italica
Seita.2G133600 0.5kb downstream 0.5kb downstream 2432 true scaffold_2: 15464944-15467375 Setaria italica
Seita.2G133600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 15464944-15465443 Setaria italica
Seita.2G133600 1.0kb upstream 1.0kb upstream 2932 true scaffold_2: 15465444-15468375 Setaria italica
Seita.2G133600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 15467376-15468375 Setaria italica
Seita.2G133600 1.0kb downstream 1.0kb downstream 2932 true scaffold_2: 15464444-15467375 Setaria italica
Seita.2G133600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 15464444-15465443 Setaria italica
Seita.2G133600 2.0kb upstream 2.0kb upstream 3932 true scaffold_2: 15465444-15469375 Setaria italica
Seita.2G133600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 15467376-15469375 Setaria italica
Seita.2G133600 2.0kb downstream 2.0kb downstream 3932 true scaffold_2: 15463444-15467375 Setaria italica
Seita.2G133600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 15463444-15465443 Setaria italica
Seita.2G133600 5.0kb upstream 5.0kb upstream 6932 true scaffold_2: 15465444-15472375 Setaria italica
Seita.2G133600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 15467376-15472375 Setaria italica
Seita.2G133600 5.0kb downstream 5.0kb downstream 6932 true scaffold_2: 15460444-15467375 Setaria italica
Seita.2G133600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 15460444-15465443 Setaria italica
Seita.2G133600 10.0kb upstream 10.0kb upstream 11932 true scaffold_2: 15465444-15477375 Setaria italica
Seita.2G133600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 15467376-15477375 Setaria italica
Seita.2G133600 10.0kb downstream 10.0kb downstream 11932 true scaffold_2: 15455444-15467375 Setaria italica
Seita.2G133600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 15455444-15465443 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185843 5267 Panicoideae View MSA
124580669 5269 Grass View MSA
122048157 5273 Angiosperm View MSA
123429094 5275 Viridiplantae View MSA
121348277 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.647        
cufflinks 2.683        
cufflinks 0.292       Low
cufflinks 0.198       Low
cufflinks 0.203       Low
cufflinks 2.599        
cufflinks 1.257        
cufflinks 2.602        
cufflinks 1.328        
cufflinks 3.736       High
cufflinks 1.674        
cufflinks 1.855        
cufflinks 1.624        
cufflinks 0.493        
cufflinks 2.354        
cufflinks 0.754        
cufflinks 2.54        
cufflinks 1.224        
cufflinks 0.211       Low
cufflinks 2.422        

0 Strain